Variant report

Variant	rs7155867
Chromosome Location	chr14:22289359-22289360
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	STAT3	chr14:22289349-22289661	MCF10A-Er-Src	breast:	n/a	n/a
2	STAT3	chr14:22289333-22289676	MCF10A-Er-Src	breast:	n/a	n/a
3	GATA1	chr14:22288838-22289710	PBDE	blood:	n/a	n/a
4	STAT3	chr14:22289326-22289644	MCF10A-Er-Src	breast:	n/a	n/a
5	FOS	chr14:22289351-22289448	MCF10A-Er-Src	breast:	n/a	n/a
6	STAT3	chr14:22289321-22289648	MCF10A-Er-Src	breast:	n/a	n/a

Variant related genes	Relation type
TRAV10	TF binding region

Extended variants
information (count: 91 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:78)

rs_ID	r²[population]
rs10131311	0.92[CEU][hapmap]
rs10459485	0.84[CEU][hapmap];0.84[MEX][hapmap]
rs10872956	0.88[CEU][hapmap]
rs10872957	0.83[CEU][hapmap]
rs11157244	0.85[CEU][hapmap]
rs11620886	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11623553	0.96[CEU][hapmap];0.85[CHB][hapmap];0.91[GIH][hapmap]
rs11625436	0.91[CEU][hapmap]
rs11626323	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11629404	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11629446	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12434548	0.92[CEU][hapmap]
rs12878216	1.00[CEU][hapmap];0.85[CHB][hapmap];0.85[CHD][hapmap];0.95[GIH][hapmap];0.87[JPT][hapmap];0.96[MEX][hapmap];0.98[TSI][hapmap];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12878351	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12878478	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12878494	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12879611	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12880912	0.85[CEU][hapmap]
rs12881322	0.92[CEU][hapmap]
rs12882219	0.87[CEU][hapmap]
rs12882572	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12882662	0.85[CEU][hapmap]
rs12884453	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12884540	0.85[CEU][hapmap]
rs12886640	0.96[CEU][hapmap]
rs12887095	1.00[CEU][hapmap];0.85[CHB][hapmap];0.87[JPT][hapmap];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12887802	0.84[CEU][hapmap]
rs12888589	0.85[CEU][hapmap];0.84[MEX][hapmap]
rs12888908	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12892925	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12895584	0.92[CEU][hapmap]
rs12897417	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12897844	0.92[CEU][hapmap]
rs1534814	0.83[CEU][hapmap]
rs2017224	1.00[CEU][hapmap];0.85[CHB][hapmap];0.87[JPT][hapmap];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2017263	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2017432	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2072608	1.00[CEU][hapmap];0.85[CHB][hapmap];0.86[CHD][hapmap];0.98[GIH][hapmap];0.87[JPT][hapmap];0.96[MEX][hapmap];0.98[TSI][hapmap];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2072609	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2204936	0.96[CEU][hapmap];0.85[CHB][hapmap];0.86[CHD][hapmap];0.95[GIH][hapmap];0.86[JPT][hapmap];0.91[MEX][hapmap];0.95[TSI][hapmap];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2204937	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2204951	0.84[CEU][hapmap]
rs2204953	0.85[CEU][hapmap]
rs2222917	1.00[CEU][hapmap];0.85[CHB][hapmap];0.86[JPT][hapmap];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2254896	0.80[CEU][hapmap]
rs2272542	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2272543	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2272544	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2272545	1.00[CEU][hapmap];0.85[CHB][hapmap];0.85[CHD][hapmap];0.98[GIH][hapmap];0.87[JPT][hapmap];0.96[MEX][hapmap];0.98[TSI][hapmap];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2272546	1.00[CEU][hapmap];0.85[CHB][hapmap];0.86[CHD][hapmap];0.98[GIH][hapmap];0.87[JPT][hapmap];0.96[MEX][hapmap];0.98[TSI][hapmap];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2320059	0.80[CEU][hapmap]
rs2320061	0.85[CEU][hapmap]
rs2320063	1.00[CEU][hapmap];0.87[MEX][hapmap];0.93[TSI][hapmap];0.91[EUR][1000 genomes]
rs2733763	0.80[CEU][hapmap]
rs2733764	0.80[CEU][hapmap]
rs2856406	0.83[CEU][hapmap]
rs2856413	0.84[CEU][hapmap]
rs4366632	0.92[CEU][hapmap]
rs4561349	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4982511	0.80[CEU][hapmap]
rs58150830	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs59599784	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs66543873	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs66805366	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs714618	0.80[CEU][hapmap]
rs7158561	0.85[CEU][hapmap];0.84[MEX][hapmap]
rs760000	1.00[CEU][hapmap];0.85[CHB][hapmap];0.87[JPT][hapmap];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs760001	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs760002	1.00[CEU][hapmap];0.85[CHB][hapmap];0.86[JPT][hapmap];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs760003	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs8004251	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap]
rs8011006	0.85[CEU][hapmap]
rs8013555	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs8015464	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs8019485	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs909073	1.00[CEU][hapmap];0.93[TSI][hapmap];0.90[EUR][1000 genomes]
rs909074	0.84[CEU][hapmap]
rs956163	1.00[CEU][hapmap];0.85[CHB][hapmap];0.86[CHD][hapmap];0.91[GIH][hapmap];0.87[JPT][hapmap];0.96[MEX][hapmap];0.95[TSI][hapmap];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1042309	chr14:22042511-22866936	Flanking Active TSS Enhancers Weak transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	90 gene(s)	inside rSNPs	diseases
2	nsv456147	chr14:22073473-22305071	Enhancers Bivalent Enhancer Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
3	nsv563851	chr14:22073473-22305071	Active TSS Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
4	nsv563852	chr14:22205447-22344160	Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
5	nsv1037902	chr14:22229021-22354103	Active TSS Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
6	nsv832741	chr14:22235781-22413637	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
7	nsv456148	chr14:22242293-22292805	Enhancers Weak transcription Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
8	nsv563853	chr14:22242293-22292805	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
9	esv3387723	chr14:22255284-22397765	Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
10	nsv901481	chr14:22262039-22333939	Active TSS Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
11	nsv430885	chr14:22267491-22975700	Enhancers Active TSS Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	124 gene(s)	inside rSNPs	diseases
12	nsv524527	chr14:22288841-22387318	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
13	nsv525130	chr14:22289359-22292805	Enhancers Weak transcription Flanking Active TSS	TF binding region CpG island	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7155867	OR11G2	cis	cerebellum	SCAN

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:22288000-22290400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
2	chr14:22288200-22290000	Enhancers	Primary hematopoietic stem cells short term culture	blood
3	chr14:22288600-22289800	Enhancers	Primary hematopoietic stem cells	blood
4	chr14:22288600-22291000	Enhancers	HMEC	breast
5	chr14:22288800-22289600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr14:22288800-22290400	Enhancers	NHEK	skin
7	chr14:22289000-22289400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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