Variant report

Variant	rs71558845
Chromosome Location	chr6:53789837-53789838
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:53649451..53651865-chr6:53788090..53790923,2	MCF-7	breast:
2	chr6:53658327..53660153-chr6:53789681..53791376,2	MCF-7	breast:
3	chr6:53778649..53781585-chr6:53788522..53790145,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000228614	Chromatin interaction
ENSG00000137269	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034955	chr6:53447607-53931055	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	nsv830664	chr6:53698021-53825270	Enhancers Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
3	esv3346482	chr6:53788493-53791691	Enhancers Weak transcription Genic enhancers Strong transcription Flanking Active TSS	TF binding region Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
4	esv3361290	chr6:53788943-53791441	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS	TF binding region Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:75 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:53759200-53794400	Weak transcription	Right Ventricle	heart
2	chr6:53760400-53791200	Weak transcription	Hela-S3	cervix
3	chr6:53760600-53793600	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr6:53761400-53791200	Weak transcription	Colon Smooth Muscle	Colon
5	chr6:53761600-53790800	Weak transcription	Fetal Heart	heart
6	chr6:53762000-53791200	Weak transcription	Muscle Satellite Cultured Cells	--
7	chr6:53762000-53791600	Weak transcription	Fetal Lung	lung
8	chr6:53768800-53796000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
9	chr6:53769200-53790400	Weak transcription	Placenta Amnion	Placenta Amnion
10	chr6:53770000-53795800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
11	chr6:53772000-53803000	Weak transcription	Lung	lung
12	chr6:53776000-53790600	Weak transcription	Brain Germinal Matrix	brain
13	chr6:53776800-53791000	Weak transcription	HUVEC	blood vessel
14	chr6:53777600-53790600	Strong transcription	Fetal Thymus	thymus
15	chr6:53778000-53791800	Weak transcription	Small Intestine	intestine
16	chr6:53779600-53791400	Weak transcription	Placenta	Placenta
17	chr6:53780200-53790400	Weak transcription	Gastric	stomach
18	chr6:53781000-53791200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr6:53782400-53790400	Weak transcription	Brain Cingulate Gyrus	brain
20	chr6:53783000-53791400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
21	chr6:53783600-53790800	Weak transcription	Cortex derived primary cultured neurospheres	brain
22	chr6:53784000-53790200	Weak transcription	Brain Substantia Nigra	brain
23	chr6:53784400-53790400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
24	chr6:53784600-53791600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
25	chr6:53784600-53794200	Weak transcription	Primary monocytes fromperipheralblood	blood
26	chr6:53784800-53794000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
27	chr6:53785600-53791400	Weak transcription	Primary hematopoietic stem cells	blood
28	chr6:53785600-53794400	Weak transcription	Thymus	Thymus
29	chr6:53786000-53791800	Weak transcription	Fetal Stomach	stomach
30	chr6:53786000-53794200	Weak transcription	Left Ventricle	heart
31	chr6:53786200-53791000	Weak transcription	NHEK	skin
32	chr6:53786600-53791200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
33	chr6:53786600-53791400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
34	chr6:53786600-53791600	Weak transcription	Rectal Smooth Muscle	rectum
35	chr6:53786800-53791400	Weak transcription	Fetal Kidney	kidney
36	chr6:53786800-53794400	Weak transcription	Stomach Smooth Muscle	stomach
37	chr6:53787000-53791200	Weak transcription	Colonic Mucosa	Colon
38	chr6:53787400-53791200	Weak transcription	HSMM	muscle
39	chr6:53787600-53790800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
40	chr6:53787600-53791400	Weak transcription	Fetal Intestine Small	intestine
41	chr6:53787600-53791400	Weak transcription	Osteobl	bone
42	chr6:53787800-53790200	Weak transcription	Esophagus	oesophagus
43	chr6:53787800-53790400	Weak transcription	H9 Cell Line	embryonic stem cell
44	chr6:53787800-53790600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
45	chr6:53787800-53790800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
46	chr6:53787800-53790800	Weak transcription	Fetal Muscle Leg	muscle
47	chr6:53787800-53791200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
48	chr6:53787800-53791200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
49	chr6:53787800-53791200	Weak transcription	Duodenum Smooth Muscle	Duodenum
50	chr6:53787800-53791200	Weak transcription	NH-A	brain

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