Variant report

Variant	rs71558953
Chromosome Location	chr6:81432459-81432460
allele	AGA/GGG
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs12213114	0.81[EUR][1000 genomes]
rs12213393	0.85[EUR][1000 genomes]
rs13193169	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1454449	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs17720061	0.85[EUR][1000 genomes]
rs2027318	0.82[EUR][1000 genomes]
rs2039768	0.85[EUR][1000 genomes]
rs6935953	0.81[EUR][1000 genomes]
rs9294179	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9341825	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9344033	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9344034	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9344035	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9344037	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9359425	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9359427	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9359429	0.81[EUR][1000 genomes]
rs9361644	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9361651	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531333	chr6:81042427-81836484	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	nsv1019670	chr6:81086504-81569984	ZNF genes & repeats Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
3	nsv604085	chr6:81297890-81439973	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv886315	chr6:81352515-81946866	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv886316	chr6:81390313-81554464	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv886317	chr6:81428336-81536597	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:81430400-81432600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
2	chr6:81430600-81432800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr6:81431800-81432600	Enhancers	HSMM	muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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