Variant report

Variant	rs71559038
Chromosome Location	chr6:27640989-27640990
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:27521716..27523597-chr6:27638518..27641412,2	K562	blood:
2	chr6:27113851..27116551-chr6:27640385..27642305,2	K562	blood:
3	chr6:27514797..27517693-chr6:27638878..27641841,2	K562	blood:
4	chr6:27102022..27104222-chr6:27640274..27641905,2	K562	blood:
5	chr6:27638628..27643322-chr6:27645901..27648389,5	K562	blood:
6	chr6:27640023..27641609-chr6:27744727..27746412,2	K562	blood:
7	chr6:27102022..27104611-chr6:27640274..27642821,2	K562	blood:
8	chr6:27635489..27641593-chr6:27648456..27655439,10	K562	blood:
9	chr6:27114095..27116551-chr6:27640385..27641956,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000197903	Chromatin interaction
ENSG00000184825	Chromatin interaction
ENSG00000265565	Chromatin interaction

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs10484399	0.85[EUR][1000 genomes]
rs13192965	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs13193480	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs13193542	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs13194781	0.82[EUR][1000 genomes]
rs13195636	0.83[EUR][1000 genomes]
rs13195728	0.85[EUR][1000 genomes]
rs13199772	0.82[EUR][1000 genomes]
rs13199906	0.82[EUR][1000 genomes]
rs13202291	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs13202295	0.92[EUR][1000 genomes]
rs13202775	0.91[EUR][1000 genomes]
rs13209332	0.83[EUR][1000 genomes]
rs13210634	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs13212318	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs13212651	0.82[EUR][1000 genomes]
rs13215275	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs13217620	0.98[EUR][1000 genomes]
rs17695758	0.82[EUR][1000 genomes]
rs17749927	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs17750747	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17751184	0.85[EUR][1000 genomes]
rs17763089	0.82[EUR][1000 genomes]
rs34064842	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs34105070	0.91[EUR][1000 genomes]
rs34194357	0.82[EUR][1000 genomes]
rs34409918	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs34432857	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs34706883	0.85[EUR][1000 genomes]
rs34718920	0.85[EUR][1000 genomes]
rs34965299	0.83[EUR][1000 genomes]
rs35037868	0.92[EUR][1000 genomes]
rs35501037	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs35715914	0.98[EUR][1000 genomes]
rs35819751	0.82[EUR][1000 genomes]
rs35848276	0.83[EUR][1000 genomes]
rs36116761	0.82[EUR][1000 genomes]
rs45509595	0.82[EUR][1000 genomes]
rs56405707	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs66785117	0.83[EUR][1000 genomes]
rs67101035	0.85[EUR][1000 genomes]
rs67652222	0.96[EUR][1000 genomes]
rs71559050	0.85[EUR][1000 genomes]
rs72845046	0.96[EUR][1000 genomes]
rs72845070	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs72847313	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022797	chr6:27396961-27864277	Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	390 gene(s)	inside rSNPs	diseases
2	nsv883510	chr6:27550712-27730064	Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	37 gene(s)	inside rSNPs	diseases
3	nsv1023673	chr6:27570731-27688782	Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases
4	nsv830618	chr6:27593274-27789605	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	143 gene(s)	inside rSNPs	diseases
5	nsv1031337	chr6:27596676-27734884	Flanking Active TSS Strong transcription Enhancers Bivalent Enhancer Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases
6	nsv525669	chr6:27623511-27657647	Bivalent Enhancer Enhancers Bivalent/Poised TSS Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
7	nsv883511	chr6:27623511-27660508	Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
8	esv2830157	chr6:27634640-27657647	Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
9	nsv518945	chr6:27634640-27668013	Weak transcription Bivalent/Poised TSS Bivalent Enhancer Active TSS Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:27634800-27641400	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
2	chr6:27635200-27641200	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr6:27638000-27641200	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr6:27638000-27641200	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr6:27638000-27641400	Active TSS	H9 Cell Line	embryonic stem cell
6	chr6:27638200-27641400	Active TSS	ES-WA7 Cell Line	embryonic stem cell
7	chr6:27638400-27641200	Active TSS	HUES6 Cell Line	embryonic stem cell
8	chr6:27638400-27641400	Active TSS	ES-I3 Cell Line	embryonic stem cell
9	chr6:27638400-27641400	Active TSS	H1 Cell Line	embryonic stem cell
10	chr6:27638600-27641000	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
11	chr6:27639600-27641000	Bivalent/Poised TSS	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr6:27639600-27641200	Active TSS	iPS-15b Cell Line	embryonic stem cell
13	chr6:27639600-27641400	Active TSS	HUES48 Cell Line	embryonic stem cell
14	chr6:27639600-27641400	Active TSS	A549	lung
15	chr6:27639600-27641600	Active TSS	K562	blood
16	chr6:27639800-27641000	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr6:27639800-27641000	Active TSS	HMEC	breast
18	chr6:27639800-27641000	Active TSS	NHEK	skin
19	chr6:27639800-27641200	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
20	chr6:27640000-27641200	Active TSS	iPS-20b Cell Line	embryonic stem cell
21	chr6:27640400-27641200	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr6:27640600-27641000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
23	chr6:27640800-27641000	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr6:27640800-27641000	Bivalent/Poised TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
25	chr6:27640800-27641000	Bivalent Enhancer	Placenta	Placenta
26	chr6:27640800-27641000	Active TSS	HepG2	liver
27	chr6:27640800-27647400	Weak transcription	GM12878-XiMat	blood

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