Variant report

Variant	rs7155918
Chromosome Location	chr14:39538855-39538856
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr14:39538820-39539733	HepG2	liver:	n/a	n/a
2	POLR2A	chr14:39538718-39538976	HepG2	liver:	n/a	n/a

Variant related genes	Relation type
SEC23A	TF binding region

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs2415530	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56920377	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57095311	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7146995	0.83[AMR][1000 genomes]
rs7156098	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73285770	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73285780	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73285782	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73287665	0.96[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs73287682	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8003707	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8014205	0.83[AMR][1000 genomes]
rs8014508	0.83[AMR][1000 genomes]
rs8014887	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3429206	chr14:39160730-39648836	Strong transcription Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Genic enhancers Enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
2	nsv1038622	chr14:39423562-39604035	Strong transcription Weak transcription Active TSS Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:39523800-39540200	Weak transcription	Psoas Muscle	Psoas
2	chr14:39525400-39540600	Strong transcription	NH-A	brain
3	chr14:39525600-39540600	Strong transcription	HSMM	muscle
4	chr14:39525600-39541000	Weak transcription	Brain Angular Gyrus	brain
5	chr14:39525600-39565600	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr14:39526000-39557200	Strong transcription	Osteobl	bone
7	chr14:39526400-39563200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr14:39526800-39540400	Weak transcription	Spleen	Spleen
9	chr14:39526800-39540800	Weak transcription	Right Ventricle	heart
10	chr14:39526800-39541200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
11	chr14:39526800-39552600	Weak transcription	Gastric	stomach
12	chr14:39526800-39553800	Weak transcription	Pancreatic Islets	Pancreatic Islet
13	chr14:39526800-39554000	Weak transcription	Aorta	Aorta
14	chr14:39526800-39554000	Weak transcription	Esophagus	oesophagus
15	chr14:39526800-39554200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
16	chr14:39526800-39554200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
17	chr14:39526800-39566600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr14:39527000-39539000	Weak transcription	Lung	lung
19	chr14:39527000-39540600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr14:39527000-39540600	Weak transcription	Thymus	Thymus
21	chr14:39527000-39541800	Weak transcription	Skeletal Muscle Male	skeletal muscle
22	chr14:39527000-39554200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr14:39527000-39565400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
24	chr14:39527400-39549000	Strong transcription	HUES6 Cell Line	embryonic stem cell
25	chr14:39527600-39554200	Weak transcription	K562	blood
26	chr14:39528000-39547800	Strong transcription	Primary T cells fromperipheralblood	blood
27	chr14:39528000-39565400	Strong transcription	Placenta	Placenta
28	chr14:39528000-39565600	Strong transcription	Primary monocytes fromperipheralblood	blood
29	chr14:39528200-39545800	Strong transcription	Dnd41	blood
30	chr14:39528200-39548800	Strong transcription	Primary T helper cells PMA-I stimulated	--
31	chr14:39528600-39566400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr14:39529200-39559400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
33	chr14:39529200-39566600	Strong transcription	HUES48 Cell Line	embryonic stem cell
34	chr14:39529600-39539400	Weak transcription	HMEC	breast
35	chr14:39529600-39539800	Weak transcription	Brain Cingulate Gyrus	brain
36	chr14:39529600-39564200	Strong transcription	Primary T helper cells fromperipheralblood	blood
37	chr14:39529800-39554200	Weak transcription	Fetal Brain Male	brain
38	chr14:39529800-39566400	Weak transcription	Fetal Heart	heart
39	chr14:39530200-39540200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
40	chr14:39530600-39552000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
41	chr14:39531000-39539000	Weak transcription	Brain Anterior Caudate	brain
42	chr14:39531200-39540800	Weak transcription	H9 Cell Line	embryonic stem cell
43	chr14:39531200-39541600	Weak transcription	Brain Substantia Nigra	brain
44	chr14:39531200-39569200	Weak transcription	Stomach Mucosa	stomach
45	chr14:39531400-39545800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
46	chr14:39531600-39543000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
47	chr14:39532000-39565400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
48	chr14:39534000-39540200	Weak transcription	Placenta Amnion	Placenta Amnion
49	chr14:39534000-39543200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
50	chr14:39534200-39539000	Weak transcription	Brain Hippocampus Middle	brain

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