Variant report

Variant	rs7156245
Chromosome Location	chr14:79657401-79657402
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11622061	0.86[CHB][hapmap];0.95[JPT][hapmap]
rs12432016	0.87[CHB][hapmap];0.95[JPT][hapmap];0.83[ASN][1000 genomes]
rs12880228	0.82[CHB][hapmap];0.85[JPT][hapmap]
rs2370930	0.90[CHB][hapmap];0.88[JPT][hapmap]
rs2370934	0.86[CHB][hapmap];0.90[JPT][hapmap]
rs2370935	0.87[CHB][hapmap];1.00[JPT][hapmap]
rs4636834	0.86[CHB][hapmap];0.85[JPT][hapmap]
rs4899736	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs6574499	0.86[CHB][hapmap];0.85[JPT][hapmap]
rs7151711	0.86[CHB][hapmap];0.95[JPT][hapmap]
rs72627190	0.82[ASN][1000 genomes]
rs8011958	0.86[CHB][hapmap];0.95[JPT][hapmap];0.85[ASN][1000 genomes]
rs8015611	0.86[CHB][hapmap];0.80[JPT][hapmap]
rs8016735	0.86[CHB][hapmap];0.90[JPT][hapmap];0.84[ASN][1000 genomes]
rs8017399	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931412	chr14:79420297-79928269	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1040837	chr14:79583862-79711565	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a
3	nsv902110	chr14:79624492-79998294	Bivalent/Poised TSS Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv827002	chr14:79654898-79665722	Enhancers Weak transcription	TF binding region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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