Variant report

Variant	rs71562738
Chromosome Location	chr7:86684049-86684050
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:86682599..86685287-chr7:86688597..86690242,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000164659	Chromatin interaction

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10231806	0.99[EUR][1000 genomes]
rs10952895	0.88[ASN][1000 genomes]
rs11970980	0.88[ASN][1000 genomes]
rs11978635	0.89[ASN][1000 genomes]
rs12704337	0.89[ASN][1000 genomes]
rs12704338	0.89[ASN][1000 genomes]
rs12704339	0.89[ASN][1000 genomes]
rs12704340	0.89[ASN][1000 genomes]
rs12704341	0.89[ASN][1000 genomes]
rs12704342	0.87[ASN][1000 genomes]
rs12704343	0.87[ASN][1000 genomes]
rs12704344	0.87[ASN][1000 genomes]
rs12704345	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12704346	0.84[ASN][1000 genomes]
rs13236712	0.87[ASN][1000 genomes]
rs13237838	0.89[ASN][1000 genomes]
rs13243613	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13245768	0.86[EUR][1000 genomes]
rs1476587	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2106951	0.86[EUR][1000 genomes]
rs2106954	0.85[EUR][1000 genomes]
rs2189519	0.91[ASN][1000 genomes]
rs28526598	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs35595157	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35766334	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs36035378	0.89[ASN][1000 genomes]
rs4727143	0.89[ASN][1000 genomes]
rs4728678	0.89[ASN][1000 genomes]
rs56347838	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58105963	0.89[ASN][1000 genomes]
rs60760249	0.89[ASN][1000 genomes]
rs61458956	0.89[ASN][1000 genomes]
rs6944949	0.89[ASN][1000 genomes]
rs6948837	0.89[ASN][1000 genomes]
rs6955173	0.89[ASN][1000 genomes]
rs71562739	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7459046	0.89[ASN][1000 genomes]
rs7786714	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1025277	chr7:86299224-87206007	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
2	nsv538999	chr7:86299224-87206007	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
3	nsv532147	chr7:86299225-87121975	Flanking Active TSS Strong transcription Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	85 gene(s)	inside rSNPs	diseases
4	nsv1015870	chr7:86490491-86802320	Enhancers Flanking Active TSS Bivalent/Poised TSS Strong transcription Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	51 gene(s)	inside rSNPs	diseases
5	nsv539000	chr7:86490491-86802320	Strong transcription Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	51 gene(s)	inside rSNPs	diseases
6	nsv527889	chr7:86496042-86832603	Enhancers Active TSS Weak transcription Strong transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:86669200-86685800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr7:86676800-86686200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr7:86677600-86688000	Weak transcription	Left Ventricle	heart
4	chr7:86678000-86687400	Weak transcription	Lung	lung
5	chr7:86679000-86684400	Weak transcription	HUVEC	blood vessel
6	chr7:86679800-86685000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr7:86682400-86686800	Enhancers	Brain Angular Gyrus	brain
8	chr7:86682600-86684600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr7:86682600-86684600	Enhancers	Fetal Brain Male	brain
10	chr7:86682800-86684400	Enhancers	Brain Anterior Caudate	brain
11	chr7:86682800-86684600	Enhancers	Brain Cingulate Gyrus	brain
12	chr7:86682800-86687400	Enhancers	Brain Inferior Temporal Lobe	brain
13	chr7:86683200-86684200	Weak transcription	Brain Hippocampus Middle	brain
14	chr7:86683200-86684200	Weak transcription	Brain Substantia Nigra	brain
15	chr7:86684000-86684400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain

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