Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10498914	0.96[EUR][1000 genomes]
rs10943477	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12527300	0.94[EUR][1000 genomes]
rs12662079	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12664999	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs13193110	0.81[EUR][1000 genomes]
rs13194318	0.85[EUR][1000 genomes]
rs13198766	0.96[EUR][1000 genomes]
rs1483053	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs16889263	0.96[EUR][1000 genomes]
rs16889275	0.96[EUR][1000 genomes]
rs16889279	0.96[EUR][1000 genomes]
rs16889353	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs34706559	0.96[EUR][1000 genomes]
rs34728195	0.97[EUR][1000 genomes]
rs34885141	0.96[EUR][1000 genomes]
rs35032650	0.96[EUR][1000 genomes]
rs35996314	0.93[EUR][1000 genomes]
rs4579319	0.88[EUR][1000 genomes]
rs71563046	0.82[EUR][1000 genomes]
rs71563056	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023379	chr7:109003574-109355234	Weak transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv608079	chr7:109098364-109862289	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv1020761	chr7:109208187-109275700	Weak transcription Genic enhancers Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:109228400-109237800	Active TSS	iPS-15b Cell Line	embryonic stem cell
2	chr7:109230800-109237400	Active TSS	H9 Cell Line	embryonic stem cell
3	chr7:109230800-109237800	Active TSS	HUES6 Cell Line	embryonic stem cell
4	chr7:109233200-109237400	Active TSS	HUES64 Cell Line	embryonic stem cell
5	chr7:109233800-109237400	Active TSS	HUES48 Cell Line	embryonic stem cell
6	chr7:109233800-109237400	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr7:109234000-109237400	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr7:109234000-109238600	Active TSS	H1 Cell Line	embryonic stem cell
9	chr7:109234600-109237800	Active TSS	iPS-18 Cell Line	embryonic stem cell
10	chr7:109235000-109236800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chr7:109235600-109236400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr7:109235800-109237800	Active TSS	ES-I3 Cell Line	embryonic stem cell
13	chr7:109236200-109237400	Active TSS	iPS-20b Cell Line	embryonic stem cell

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