The 2.0 version of rSNPBase
Home
Search
Document
What's New
Tutorial
Data Content
Download
Feedback
About Us
Variant report
Variant
rs71564043
Chromosome Location
chr8:110509633-110509634
allele
-/C
Outlinks
Ensembl
 
UCSC
Chromatin state
Related regulatory elements
Target genes
Other information
TF binding region (count:0)
CpG islands (count:0)
Chromatin interactive region (count:2)
LncRNA region (count:0)
Mature miRNA region (count: 0)
miRNA target sites (count:0)
No data
No data
(count:2 , 50 per page) page:
1
No.
Distal block
Cell Line
Cell type
Cell Stage
1
chr10:133996695..133999397-chr8:110508706..110510962,2
MCF-7
breast:
2
chr8:110506183..110508052-chr8:110509587..110512256,2
MCF-7
breast:
No data
No data
No data
Variant related genes
Relation type
ENSG00000235010
Chromatin interaction
Extended variants information (count: 3 )
Associated traits (count: 0)
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
No.
Variant name
Chromosome position
Chromatin state
Related regulatory elements
Target genes
Extended variants
Associated traits
1
nsv891281
chr8:110450092-110558622
Weak transcription Active TSS Flanking Active TSS Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS
TF binding regionCpG islandChromatin interactive region
15 gene(s)
inside rSNPs
diseases
2
esv2554092
chr8:110509394-110511181
Inactive region
TF binding regionChromatin interactive region
3 gene(s)
inside rSNPs
diseases
3
esv3428944
chr8:110509626-110511624
Inactive region
Chromatin interactive region
3 gene(s)
inside rSNPs
diseases
No data
Chromatin state (count:0 , 50 per page) page:
No data
Quick Search:
Input of quick search could be:
dbSNP/dbVar ID:
rs12345
/
nsv7879
a single nucleotide as 0-based coordinates:
chr1:12345
chromosomal regions:
chr1:12345-34567
what's new
New variant types
New dimension of annotation
New regulatory manner
More detailed annotation on variant overlapped TFBS
More extended data
New search manner
Quick links