Variant report

Variant	rs71564440
Chromosome Location	chr6:143908406-143908407
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs11155305	0.81[EUR][1000 genomes]
rs17288611	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34359479	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv7972	chr6:143905304-143911787	Enhancers ZNF genes & repeats Weak transcription Genic enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:143895600-143918200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
2	chr6:143899400-143918000	Weak transcription	Spleen	Spleen
3	chr6:143899800-143919200	Weak transcription	Monocytes-CD14+_RO01746	blood
4	chr6:143900800-143918200	Weak transcription	Duodenum Smooth Muscle	Duodenum
5	chr6:143901200-143918000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr6:143903200-143912600	Weak transcription	Primary T cells fromperipheralblood	blood
7	chr6:143903400-143911800	Weak transcription	Fetal Intestine Large	intestine
8	chr6:143903400-143918200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
9	chr6:143903600-143912200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
10	chr6:143903600-143918600	Weak transcription	Primary T helper cells PMA-I stimulated	--
11	chr6:143905600-143911400	Weak transcription	Placenta	Placenta
12	chr6:143905600-143915600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr6:143906600-143915400	Weak transcription	Gastric	stomach
14	chr6:143907000-143911400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr6:143907800-143910400	Weak transcription	Stomach Mucosa	stomach
16	chr6:143908000-143912600	Weak transcription	Fetal Intestine Small	intestine
17	chr6:143908000-143914600	Weak transcription	Fetal Stomach	stomach
18	chr6:143908000-143915800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
19	chr6:143908200-143911400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links