Variant report

Variant	rs71564466
Chromosome Location	chr6:144472540-144472541
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:144472179..144474149-chr6:144476552..144479484,2	K562	blood:

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs12215407	1.00[ASN][1000 genomes]
rs2328535	1.00[ASN][1000 genomes]
rs4896691	1.00[ASN][1000 genomes]
rs73004490	1.00[ASN][1000 genomes]
rs73004494	1.00[ASN][1000 genomes]
rs73781334	1.00[ASN][1000 genomes]
rs73781365	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024333	chr6:144468065-144502824	Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:144470400-144473200	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
2	chr6:144470600-144472800	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
3	chr6:144470600-144473000	Active TSS	Right Ventricle	heart
4	chr6:144470800-144472600	Bivalent/Poised TSS	ES-WA7 Cell Line	embryonic stem cell
5	chr6:144470800-144472600	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
6	chr6:144470800-144472600	Active TSS	Primary T helper naive cells from peripheral blood	blood
7	chr6:144470800-144472800	Bivalent/Poised TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr6:144470800-144472800	Active TSS	Pancreatic Islets	Pancreatic Islet
9	chr6:144470800-144473000	Active TSS	Right Atrium	heart
10	chr6:144470800-144473400	Bivalent/Poised TSS	Psoas Muscle	Psoas
11	chr6:144471000-144472600	Active TSS	Primary T killer memory cells from peripheral blood	blood
12	chr6:144471000-144472600	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
13	chr6:144471000-144472600	Active TSS	Left Ventricle	heart
14	chr6:144471000-144472600	Active TSS	Spleen	Spleen
15	chr6:144471000-144472800	Active TSS	Breast Myoepithelial Primary Cells	Breast
16	chr6:144471000-144472800	Active TSS	Primary T helper memory cells from peripheral blood 2	blood
17	chr6:144471000-144472800	Active TSS	Aorta	Aorta
18	chr6:144471000-144472800	Active TSS	Esophagus	oesophagus
19	chr6:144471000-144473200	Active TSS	Sigmoid Colon	Sigmoid Colon
20	chr6:144471200-144472600	Active TSS	Primary T helper memory cells from peripheral blood 1	blood
21	chr6:144471200-144472600	Active TSS	Primary T helper cells PMA-I stimulated	--
22	chr6:144471200-144472600	Active TSS	Primary T regulatory cells fromperipheralblood	blood
23	chr6:144471200-144472600	Active TSS	Primary T killer naive cells fromperipheralblood	blood
24	chr6:144471200-144472600	Active TSS	Gastric	stomach
25	chr6:144471200-144472600	Active TSS	Pancreas	Pancrea
26	chr6:144471200-144472800	Active TSS	Primary monocytes fromperipheralblood	blood
27	chr6:144471200-144474200	Active TSS	GM12878-XiMat	blood
28	chr6:144471400-144472600	Bivalent/Poised TSS	IMR90 fetal lung fibroblasts Cell Line	lung
29	chr6:144471400-144472600	Active TSS	Primary neutrophils fromperipheralblood	blood
30	chr6:144471400-144472600	Active TSS	Primary B cells from peripheral blood	blood
31	chr6:144471400-144472600	Active TSS	Duodenum Mucosa	Duodenum
32	chr6:144471400-144472600	Active TSS	Ovary	ovary
33	chr6:144471400-144472800	Active TSS	Primary T cells fromperipheralblood	blood
34	chr6:144471400-144472800	Active TSS	Primary Natural Killer cells fromperipheralblood	blood
35	chr6:144471400-144472800	Active TSS	Monocytes-CD14+_RO01746	blood
36	chr6:144471400-144472800	Active TSS	NHDF-Ad	bronchial
37	chr6:144471400-144473000	Active TSS	Lung	lung
38	chr6:144471600-144472600	Active TSS	Liver	Liver
39	chr6:144471600-144472600	Active TSS	Thymus	Thymus
40	chr6:144471600-144472800	Active TSS	Stomach Smooth Muscle	stomach
41	chr6:144471800-144472600	Transcr. at gene 5' and 3'	Primary T helper 17 cells PMA-I stimulated	--
42	chr6:144471800-144472600	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
43	chr6:144471800-144472600	Active TSS	Colonic Mucosa	Colon
44	chr6:144471800-144472800	Flanking Bivalent TSS/Enh	Fetal Adrenal Gland	Adrenal Gland
45	chr6:144472000-144472600	Flanking Bivalent TSS/Enh	HUES48 Cell Line	embryonic stem cell
46	chr6:144472000-144472600	Active TSS	Primary B cells from cord blood	blood
47	chr6:144472000-144472600	Flanking Bivalent TSS/Enh	Ganglion Eminence derived primary cultured neurospheres	brain
48	chr6:144472000-144472600	Flanking Active TSS	Brain Angular Gyrus	brain
49	chr6:144472000-144472600	Flanking Bivalent TSS/Enh	Fetal Intestine Small	intestine
50	chr6:144472000-144472600	Flanking Bivalent TSS/Enh	Fetal Stomach	stomach

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