Variant report

Variant	rs7156475
Chromosome Location	chr14:55331897-55331898
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:55329931..55332245-chr14:55336217..55337731,2	MCF-7	breast:

Extended variants
information (count: 12 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10498472	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs17253577	0.91[CEU][hapmap];0.90[EUR][1000 genomes]
rs17253591	0.91[CEU][hapmap];0.90[EUR][1000 genomes]
rs17671345	0.91[CEU][hapmap];0.90[EUR][1000 genomes]
rs17832263	1.00[CEU][hapmap];1.00[AMR][1000 genomes]
rs2334299	0.88[AMR][1000 genomes]
rs2878169	0.91[CEU][hapmap];0.94[EUR][1000 genomes]
rs55786710	0.90[EUR][1000 genomes]
rs56130647	0.90[EUR][1000 genomes]
rs61741224	0.88[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530042	chr14:55208170-55386966	Enhancers Genic enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	nsv932970	chr14:55326559-55532749	Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	49 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7156475	WDHD1	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:57 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:55303400-55337000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr14:55305200-55337200	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr14:55306200-55337000	Weak transcription	Rectal Mucosa Donor 31	rectum
4	chr14:55306400-55336800	Weak transcription	Dnd41	blood
5	chr14:55306600-55336600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr14:55306800-55337000	Weak transcription	Brain Anterior Caudate	brain
7	chr14:55308000-55336600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
8	chr14:55308200-55332400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
9	chr14:55311800-55337000	Weak transcription	Fetal Intestine Large	intestine
10	chr14:55321000-55337000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr14:55321200-55337000	Weak transcription	H1 Cell Line	embryonic stem cell
12	chr14:55324400-55334000	Weak transcription	Fetal Muscle Trunk	muscle
13	chr14:55324800-55332400	Weak transcription	Fetal Lung	lung
14	chr14:55324800-55337000	Weak transcription	Duodenum Smooth Muscle	Duodenum
15	chr14:55325000-55332600	Weak transcription	Small Intestine	intestine
16	chr14:55325000-55337200	Weak transcription	Adipose Nuclei	Adipose
17	chr14:55325200-55333200	Weak transcription	Fetal Stomach	stomach
18	chr14:55325400-55332200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
19	chr14:55326200-55333400	Weak transcription	GM12878-XiMat	blood
20	chr14:55326200-55336400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
21	chr14:55326400-55332400	Weak transcription	Pancreatic Islets	Pancreatic Islet
22	chr14:55326400-55333200	Weak transcription	Lung	lung
23	chr14:55326400-55333200	Weak transcription	Spleen	Spleen
24	chr14:55326600-55332600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
25	chr14:55326600-55336600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
26	chr14:55327000-55332400	Weak transcription	Thymus	Thymus
27	chr14:55327000-55336000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
28	chr14:55327000-55336400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
29	chr14:55327000-55338200	Weak transcription	Primary B cells from peripheral blood	blood
30	chr14:55327200-55336600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
31	chr14:55327200-55336600	Weak transcription	Duodenum Mucosa	Duodenum
32	chr14:55327400-55332600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
33	chr14:55329400-55337000	Weak transcription	Fetal Intestine Small	intestine
34	chr14:55329400-55347800	Weak transcription	Primary B cells from cord blood	blood
35	chr14:55329600-55337200	Weak transcription	Stomach Mucosa	stomach
36	chr14:55330600-55333400	Weak transcription	Primary T cells from cord blood	blood
37	chr14:55330800-55337200	Weak transcription	Aorta	Aorta
38	chr14:55330800-55347800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
39	chr14:55331200-55333600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
40	chr14:55331200-55333600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
41	chr14:55331200-55333800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
42	chr14:55331400-55332000	Weak transcription	Liver	Liver
43	chr14:55331400-55332600	Weak transcription	Primary T helper cells PMA-I stimulated	--
44	chr14:55331400-55336600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
45	chr14:55331400-55336600	Weak transcription	Rectal Mucosa Donor 29	rectum
46	chr14:55331400-55337000	Weak transcription	Primary T cells fromperipheralblood	blood
47	chr14:55331600-55333000	Weak transcription	HepG2	liver
48	chr14:55331600-55333200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
49	chr14:55331600-55333400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
50	chr14:55331600-55336200	Weak transcription	Hela-S3	cervix

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