Variant report

Variant	rs71565394
Chromosome Location	chr6:33579923-33579924
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:33576666..33582891-chr6:33586745..33591603,10	MCF-7	breast:
2	chr6:33574216..33577618-chr6:33579266..33582393,4	MCF-7	breast:
3	chr6:33561930..33564001-chr6:33577360..33579939,2	K562	blood:
4	chr6:33578081..33580623-chr6:33585899..33589337,3	K562	blood:

Variant related genes	Relation type
ENSG00000096433	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv462896	chr6:33534880-33588147	Bivalent Enhancer Flanking Active TSS Weak transcription Strong transcription Active TSS Genic enhancers Enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	nsv602833	chr6:33534880-33588147	Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
3	nsv885770	chr6:33543409-33614127	Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases
4	nsv830638	chr6:33551202-33711346	Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	46 gene(s)	inside rSNPs	diseases
5	nsv5250	chr6:33565017-33598370	Active TSS Enhancers Weak transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	24 gene(s)	inside rSNPs	diseases
6	esv3415458	chr6:33579611-33580189	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:53 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:33574400-33583200	Enhancers	HMEC	breast
2	chr6:33574600-33580000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
3	chr6:33574600-33582400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr6:33575000-33580200	Enhancers	A549	lung
5	chr6:33576400-33580000	Enhancers	Left Ventricle	heart
6	chr6:33576600-33580400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr6:33576600-33580400	Enhancers	Breast Myoepithelial Primary Cells	Breast
8	chr6:33576800-33580000	Flanking Active TSS	Hela-S3	cervix
9	chr6:33577000-33580000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr6:33577200-33580200	Enhancers	Osteobl	bone
11	chr6:33577400-33583000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr6:33577600-33580000	Enhancers	Colonic Mucosa	Colon
13	chr6:33577600-33581000	Weak transcription	Placenta Amnion	Placenta Amnion
14	chr6:33577800-33580000	Enhancers	Rectal Mucosa Donor 31	rectum
15	chr6:33578000-33587000	Weak transcription	Skeletal Muscle Female	skeletal muscle
16	chr6:33578200-33581000	Weak transcription	NH-A	brain
17	chr6:33578400-33581000	Weak transcription	NHEK	skin
18	chr6:33578400-33581200	Weak transcription	HUVEC	blood vessel
19	chr6:33578600-33580000	Enhancers	Brain Substantia Nigra	brain
20	chr6:33578600-33580800	Weak transcription	Muscle Satellite Cultured Cells	--
21	chr6:33578800-33581000	Weak transcription	NHLF	lung
22	chr6:33578800-33588000	Weak transcription	Gastric	stomach
23	chr6:33579000-33580800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr6:33579000-33580800	Weak transcription	NHDF-Ad	bronchial
25	chr6:33579000-33581000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
26	chr6:33579000-33581000	Weak transcription	HSMMtube	muscle
27	chr6:33579000-33581200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
28	chr6:33579000-33581400	Weak transcription	Placenta	Placenta
29	chr6:33579000-33583800	Weak transcription	Right Ventricle	heart
30	chr6:33579200-33581000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
31	chr6:33579200-33581000	Weak transcription	Brain Hippocampus Middle	brain
32	chr6:33579200-33581400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
33	chr6:33579200-33581400	Weak transcription	Skeletal Muscle Male	skeletal muscle
34	chr6:33579200-33586600	Weak transcription	Fetal Lung	lung
35	chr6:33579200-33587000	Weak transcription	Pancreas	Pancrea
36	chr6:33579400-33581000	Weak transcription	Brain Inferior Temporal Lobe	brain
37	chr6:33579400-33581000	Weak transcription	Esophagus	oesophagus
38	chr6:33579400-33581200	Weak transcription	Brain Cingulate Gyrus	brain
39	chr6:33579400-33581600	Weak transcription	Spleen	Spleen
40	chr6:33579400-33587000	Weak transcription	H9 Cell Line	embryonic stem cell
41	chr6:33579400-33587000	Weak transcription	Right Atrium	heart
42	chr6:33579400-33588000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
43	chr6:33579600-33580600	Weak transcription	Lung	lung
44	chr6:33579600-33581000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
45	chr6:33579600-33581000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
46	chr6:33579600-33581000	Weak transcription	Stomach Mucosa	stomach
47	chr6:33579600-33581000	Enhancers	HepG2	liver
48	chr6:33579600-33581200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
49	chr6:33579600-33581200	Weak transcription	H1 Cell Line	embryonic stem cell
50	chr6:33579800-33580000	Enhancers	HSMM	muscle

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