Variant report

Variant	rs71570205
Chromosome Location	chr6:150438172-150438173
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:150431155..150433658-chr6:150438075..150440832,2	K562	blood:

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs11751552	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11752342	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11752652	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11752667	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11753294	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11754027	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11756964	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11757281	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11759294	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11759308	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs13192358	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs13192708	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs13202532	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs13205318	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs13206333	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs13207159	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs13212854	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs13215119	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs13218442	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs13220018	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1886362	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1889549	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2012793	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2093908	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs34373648	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs35564859	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs55905536	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs55917240	0.92[AFR][1000 genomes];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs55972005	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6915134	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7452369	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs912568	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886770	chr6:150395424-150499889	Enhancers Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Active TSS Weak transcription Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
2	nsv1026690	chr6:150419115-150485583	Bivalent Enhancer Active TSS Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:150436800-150438200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr6:150437200-150438200	Enhancers	Breast Myoepithelial Primary Cells	Breast
3	chr6:150437200-150438200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr6:150437200-150438200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr6:150437200-150440000	Weak transcription	Fetal Intestine Small	intestine
6	chr6:150437400-150439800	Weak transcription	Right Atrium	heart
7	chr6:150437800-150439600	Weak transcription	Esophagus	oesophagus
8	chr6:150437800-150440000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr6:150438000-150439400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr6:150438000-150439400	Weak transcription	Cortex derived primary cultured neurospheres	brain
11	chr6:150438000-150439400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr6:150438000-150440200	Weak transcription	Brain Cingulate Gyrus	brain

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