Variant report

Variant	rs7157405
Chromosome Location	chr14:71290125-71290126
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:71288544..71291419-chr14:71373851..71375362,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000100731	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs17108554	1.00[JPT][hapmap]
rs6573983	0.83[GIH][hapmap];1.00[JPT][hapmap]
rs8018972	1.00[JPT][hapmap]
rs8019053	1.00[JPT][hapmap]
rs8019156	0.86[LWK][hapmap];0.82[MKK][hapmap];0.96[YRI][hapmap];0.80[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1039460	chr14:71176898-71371125	Weak transcription Enhancers Bivalent/Poised TSS Active TSS Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
2	nsv1041980	chr14:71196358-71767339	Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Enhancers Strong transcription Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
3	nsv542125	chr14:71196358-71767339	Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
4	nsv1035416	chr14:71212882-71623271	Strong transcription Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
5	nsv542126	chr14:71212882-71623271	Weak transcription Enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
6	nsv1049741	chr14:71233043-71462509	Enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
7	nsv1037839	chr14:71263886-71625114	Flanking Active TSS Weak transcription Genic enhancers Active TSS Strong transcription Enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
8	nsv542127	chr14:71263886-71625114	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
9	nsv1038007	chr14:71269747-71667680	Weak transcription Enhancers Genic enhancers Active TSS Strong transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:71289400-71290200	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr14:71289800-71290200	Flanking Bivalent TSS/Enh	ES-I3 Cell Line	embryonic stem cell
3	chr14:71289800-71290200	Flanking Bivalent TSS/Enh	H1 Cell Line	embryonic stem cell
4	chr14:71289800-71290200	Flanking Active TSS	H9 Cell Line	embryonic stem cell
5	chr14:71289800-71290200	Bivalent Enhancer	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr14:71289800-71290200	Flanking Bivalent TSS/Enh	HUES48 Cell Line	embryonic stem cell
7	chr14:71289800-71290200	Flanking Bivalent TSS/Enh	HUES6 Cell Line	embryonic stem cell
8	chr14:71289800-71290200	Flanking Bivalent TSS/Enh	HUES64 Cell Line	embryonic stem cell
9	chr14:71289800-71290200	Flanking Bivalent TSS/Enh	iPS-15b Cell Line	embryonic stem cell
10	chr14:71289800-71290200	Flanking Bivalent TSS/Enh	iPS-20b Cell Line	embryonic stem cell
11	chr14:71289800-71290200	Bivalent Enhancer	Primary monocytes fromperipheralblood	blood
12	chr14:71289800-71290200	Bivalent Enhancer	Primary neutrophils fromperipheralblood	blood
13	chr14:71289800-71290200	Enhancers	Primary hematopoietic stem cells	blood
14	chr14:71289800-71290200	Bivalent Enhancer	Primary hematopoietic stem cells short term culture	blood
15	chr14:71289800-71290200	Enhancers	Primary T helper naive cells from peripheral blood	blood
16	chr14:71289800-71290200	Bivalent/Poised TSS	Brain Cingulate Gyrus	brain
17	chr14:71289800-71290200	Flanking Active TSS	Fetal Brain Female	brain
18	chr14:71289800-71290200	Enhancers	Stomach Smooth Muscle	stomach
19	chr14:71289800-71290400	Weak transcription	Right Ventricle	heart
20	chr14:71289800-71293600	Weak transcription	Liver	Liver
21	chr14:71289800-71294000	Weak transcription	HSMM	muscle
22	chr14:71290000-71290200	Bivalent Enhancer	H9 Derived Neuron Cultured Cells	ES cell derived
23	chr14:71290000-71290200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
24	chr14:71290000-71290200	Flanking Bivalent TSS/Enh	iPS-18 Cell Line	embryonic stem cell
25	chr14:71290000-71290200	Bivalent Enhancer	iPS DF 19.11 Cell Line	embryonic stem cell
26	chr14:71290000-71290200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
27	chr14:71290000-71290200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
28	chr14:71290000-71290200	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
29	chr14:71290000-71290400	Enhancers	Fetal Intestine Large	intestine
30	chr14:71290000-71290600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
31	chr14:71290000-71290600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
32	chr14:71290000-71290600	Enhancers	Brain Anterior Caudate	brain
33	chr14:71290000-71290800	Enhancers	Fetal Intestine Small	intestine
34	chr14:71290000-71291200	Weak transcription	Ovary	ovary
35	chr14:71290000-71291400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
36	chr14:71290000-71294000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
37	chr14:71290000-71294000	Weak transcription	Muscle Satellite Cultured Cells	--
38	chr14:71290000-71294000	Weak transcription	Duodenum Mucosa	Duodenum
39	chr14:71290000-71298600	Weak transcription	Right Atrium	heart

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