Variant report

Variant	rs71574625
Chromosome Location	chr6:132935476-132935477
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs13220366	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35751778	0.82[EUR][1000 genomes]
rs35927289	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532069	chr6:132776411-133462292	Active TSS Strong transcription Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
2	nsv1015742	chr6:132933666-133285852	Active TSS Flanking Active TSS Enhancers Strong transcription Weak transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	71 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:132930400-132935600	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr6:132930800-132936200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr6:132931600-132937000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr6:132932000-132935600	Weak transcription	Monocytes-CD14+_RO01746	blood
5	chr6:132932000-132937200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr6:132933400-132936400	Active TSS	Duodenum Mucosa	Duodenum
7	chr6:132933600-132935600	Enhancers	Rectal Mucosa Donor 31	rectum
8	chr6:132934000-132935800	Weak transcription	Brain Anterior Caudate	brain
9	chr6:132934200-132935600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
10	chr6:132934200-132936400	Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr6:132934400-132936000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr6:132934800-132936400	Active TSS	Liver	Liver
13	chr6:132934800-132936600	Enhancers	NHEK	skin
14	chr6:132935000-132935600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr6:132935000-132935800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr6:132935000-132936600	Weak transcription	Brain Cingulate Gyrus	brain
17	chr6:132935200-132937600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
18	chr6:132935400-132935800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr6:132935400-132936000	Active TSS	Duodenum Smooth Muscle	Duodenum

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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