Variant report

Variant	rs7157775
Chromosome Location	chr14:71288400-71288401
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:71287022..71288979-chr14:71420720..71423622,2	MCF-7	breast:
2	chr14:71274624..71277570-chr14:71286483..71288714,2	MCF-7	breast:
3	chr14:71287734..71288653-chr14:71422559..71423263,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000259153	Chromatin interaction
ENSG00000006432	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs2023955	0.91[ASN][1000 genomes]
rs2107665	0.91[ASN][1000 genomes]
rs4528504	0.91[ASN][1000 genomes]
rs4902860	0.81[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs7155910	0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1039460	chr14:71176898-71371125	Weak transcription Enhancers Bivalent/Poised TSS Active TSS Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
2	nsv1041980	chr14:71196358-71767339	Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Enhancers Strong transcription Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
3	nsv542125	chr14:71196358-71767339	Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
4	nsv1035416	chr14:71212882-71623271	Strong transcription Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
5	nsv542126	chr14:71212882-71623271	Weak transcription Enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
6	nsv1049741	chr14:71233043-71462509	Enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
7	nsv1037839	chr14:71263886-71625114	Flanking Active TSS Weak transcription Genic enhancers Active TSS Strong transcription Enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
8	nsv542127	chr14:71263886-71625114	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
9	nsv1038007	chr14:71269747-71667680	Weak transcription Enhancers Genic enhancers Active TSS Strong transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:184 , 50 per page) page: 1 2 3 4

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:71277200-71288400	Weak transcription	Pancreas	Pancrea
2	chr14:71282800-71288400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr14:71285000-71288800	Weak transcription	Hela-S3	cervix
4	chr14:71287800-71288400	Enhancers	Muscle Satellite Cultured Cells	--
5	chr14:71287800-71288400	Flanking Bivalent TSS/Enh	Fetal Intestine Small	intestine
6	chr14:71287800-71289800	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
7	chr14:71288000-71288400	Bivalent/Poised TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr14:71288000-71288400	Bivalent/Poised TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr14:71288000-71288400	Flanking Bivalent TSS/Enh	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr14:71288000-71288400	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
11	chr14:71288000-71288400	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
12	chr14:71288000-71288400	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
13	chr14:71288000-71288400	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr14:71288000-71288400	Bivalent/Poised TSS	Primary T cells from cord blood	blood
15	chr14:71288000-71288400	Active TSS	Primary hematopoietic stem cells	blood
16	chr14:71288000-71288400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
17	chr14:71288000-71288400	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
18	chr14:71288000-71288400	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr14:71288000-71288400	Flanking Active TSS	Liver	Liver
20	chr14:71288000-71288400	Active TSS	Fetal Brain Female	brain
21	chr14:71288000-71288400	Flanking Bivalent TSS/Enh	Fetal Intestine Large	intestine
22	chr14:71288000-71288400	Bivalent Enhancer	Fetal Stomach	stomach
23	chr14:71288000-71288400	Bivalent Enhancer	Fetal Thymus	thymus
24	chr14:71288000-71288400	Bivalent/Poised TSS	Rectal Mucosa Donor 29	rectum
25	chr14:71288000-71288400	Bivalent Enhancer	Skeletal Muscle Female	skeletal muscle
26	chr14:71288000-71288400	Enhancers	Small Intestine	intestine
27	chr14:71288000-71288400	Flanking Active TSS	HSMM	muscle
28	chr14:71288000-71288600	Bivalent/Poised TSS	ES-WA7 Cell Line	embryonic stem cell
29	chr14:71288000-71288600	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
30	chr14:71288000-71288600	Flanking Bivalent TSS/Enh	Brain Germinal Matrix	brain
31	chr14:71288000-71288600	Bivalent Enhancer	Fetal Heart	heart
32	chr14:71288000-71288800	Bivalent Enhancer	Fetal Brain Male	brain
33	chr14:71288000-71288800	Bivalent Enhancer	Fetal Lung	lung
34	chr14:71288000-71288800	Flanking Bivalent TSS/Enh	Dnd41	blood
35	chr14:71288000-71289600	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
36	chr14:71288000-71289800	Active TSS	H9 Cell Line	embryonic stem cell
37	chr14:71288000-71290000	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
38	chr14:71288200-71288400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
39	chr14:71288200-71288400	Flanking Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
40	chr14:71288200-71288400	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
41	chr14:71288200-71288400	Bivalent/Poised TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
42	chr14:71288200-71288400	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
43	chr14:71288200-71288400	Flanking Bivalent TSS/Enh	IMR90 fetal lung fibroblasts Cell Line	lung
44	chr14:71288200-71288400	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
45	chr14:71288200-71288400	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
46	chr14:71288200-71288400	Flanking Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
47	chr14:71288200-71288400	Bivalent Enhancer	Primary monocytes fromperipheralblood	blood
48	chr14:71288200-71288400	Flanking Bivalent TSS/Enh	Primary neutrophils fromperipheralblood	blood
49	chr14:71288200-71288400	Bivalent Enhancer	Primary B cells from cord blood	blood
50	chr14:71288200-71288400	Bivalent Enhancer	Primary hematopoietic stem cells short term culture	blood

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