Variant report

Variant	rs71579855
Chromosome Location	chr7:129072344-129072345
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr7:129045284..129048039-chr7:129071768..129074348,2	K562	blood:
2	chr7:129070406..129072792-chr7:129104561..129108089,3	MCF-7	breast:
3	chr7:129071855..129073981-chr7:129682327..129684001,2	K562	blood:
4	chr7:129068565..129070248-chr7:129070805..129072371,2	MCF-7	breast:
5	chr7:128864343..128867175-chr7:129072018..129074296,2	K562	blood:
6	chr7:129056495..129059327-chr7:129070070..129074114,3	K562	blood:
7	chr7:129063475..129066777-chr7:129072113..129074429,3	MCF-7	breast:
8	chr7:129057268..129059327-chr7:129071213..129072971,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000252280	Chromatin interaction
ENSG00000158467	Chromatin interaction

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs12706876	0.82[EUR][1000 genomes]
rs12706877	0.85[EUR][1000 genomes]
rs12706878	0.85[EUR][1000 genomes]
rs12706879	0.85[EUR][1000 genomes]
rs12706880	0.85[EUR][1000 genomes]
rs12706881	0.82[EUR][1000 genomes]
rs12706882	0.85[EUR][1000 genomes]
rs12706883	0.85[EUR][1000 genomes]
rs12706884	0.85[EUR][1000 genomes]
rs13230585	0.85[EUR][1000 genomes]
rs13245699	0.82[EUR][1000 genomes]
rs13246455	0.82[EUR][1000 genomes]
rs34071868	0.82[EUR][1000 genomes]
rs34285950	0.85[EUR][1000 genomes]
rs34783919	0.85[EUR][1000 genomes]
rs34822917	0.85[EUR][1000 genomes]
rs35060087	0.85[EUR][1000 genomes]
rs35064108	0.85[EUR][1000 genomes]
rs35195965	0.85[EUR][1000 genomes]
rs71579847	0.85[EUR][1000 genomes]
rs71579850	0.85[EUR][1000 genomes]
rs71579851	0.85[EUR][1000 genomes]
rs71579852	0.85[EUR][1000 genomes]
rs71579854	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3331483	chr7:128918442-129082887	Strong transcription Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
2	nsv428508	chr7:128946738-129114691	Enhancers Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
3	nsv1015550	chr7:128992460-129111060	Enhancers Weak transcription Flanking Active TSS Strong transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
4	nsv539122	chr7:128992460-129111060	Strong transcription Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
5	nsv831128	chr7:129063040-129240800	Weak transcription Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:71 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:129008400-129073200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
2	chr7:129017400-129073000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
3	chr7:129028400-129073000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr7:129029200-129073200	Weak transcription	Brain Angular Gyrus	brain
5	chr7:129033800-129073600	Weak transcription	Right Ventricle	heart
6	chr7:129035600-129072600	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr7:129035600-129073600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr7:129041600-129073400	Weak transcription	HMEC	breast
9	chr7:129043400-129072600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
10	chr7:129046600-129073400	Weak transcription	Muscle Satellite Cultured Cells	--
11	chr7:129048600-129073000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
12	chr7:129049600-129073400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
13	chr7:129052600-129073200	Weak transcription	GM12878-XiMat	blood
14	chr7:129058200-129072400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
15	chr7:129060200-129072600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
16	chr7:129061200-129072600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
17	chr7:129062800-129073200	Weak transcription	Psoas Muscle	Psoas
18	chr7:129062800-129073400	Weak transcription	Right Atrium	heart
19	chr7:129063200-129073200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
20	chr7:129064000-129073200	Weak transcription	Hela-S3	cervix
21	chr7:129064800-129073200	Weak transcription	Spleen	Spleen
22	chr7:129065000-129072800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
23	chr7:129065000-129073200	Weak transcription	Brain Hippocampus Middle	brain
24	chr7:129065800-129073200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
25	chr7:129066200-129073000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
26	chr7:129066200-129073200	Weak transcription	Placenta	Placenta
27	chr7:129066400-129072600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
28	chr7:129066400-129072800	Weak transcription	Primary T helper cells PMA-I stimulated	--
29	chr7:129066400-129073200	Weak transcription	Primary T cells fromperipheralblood	blood
30	chr7:129066600-129072600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
31	chr7:129066600-129073200	Weak transcription	Brain Cingulate Gyrus	brain
32	chr7:129066600-129073200	Weak transcription	NHEK	skin
33	chr7:129066800-129073000	Weak transcription	Skeletal Muscle Female	skeletal muscle
34	chr7:129066800-129073200	Weak transcription	Brain Substantia Nigra	brain
35	chr7:129066800-129073200	Weak transcription	Esophagus	oesophagus
36	chr7:129066800-129073600	Weak transcription	Gastric	stomach
37	chr7:129067000-129073200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
38	chr7:129067000-129073400	Weak transcription	HSMMtube	muscle
39	chr7:129067200-129073200	Weak transcription	Fetal Muscle Trunk	muscle
40	chr7:129067400-129073200	Weak transcription	Skeletal Muscle Male	skeletal muscle
41	chr7:129067600-129072600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
42	chr7:129067600-129073000	Weak transcription	Adipose Nuclei	Adipose
43	chr7:129067600-129073200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
44	chr7:129067600-129073200	Weak transcription	Pancreas	Pancrea
45	chr7:129067600-129073600	Weak transcription	Aorta	Aorta
46	chr7:129067800-129073200	Weak transcription	Brain Inferior Temporal Lobe	brain
47	chr7:129067800-129073200	Weak transcription	Colonic Mucosa	Colon
48	chr7:129067800-129073200	Weak transcription	Fetal Stomach	stomach
49	chr7:129067800-129073400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
50	chr7:129067800-129073400	Weak transcription	Ovary	ovary

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