Variant report

Variant	rs71581271
Chromosome Location	chr5:116349219-116349220
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10040194	0.86[ASN][1000 genomes]
rs10040196	0.86[ASN][1000 genomes]
rs10074601	0.87[ASN][1000 genomes]
rs10079735	0.87[ASN][1000 genomes]
rs10478319	0.86[ASN][1000 genomes]
rs10478320	0.86[ASN][1000 genomes]
rs13157896	0.87[ASN][1000 genomes]
rs13175694	0.87[ASN][1000 genomes]
rs1456275	0.81[AFR][1000 genomes]
rs1459091	0.89[ASN][1000 genomes]
rs4583923	0.87[ASN][1000 genomes]
rs4920944	0.86[ASN][1000 genomes]
rs6594994	0.86[ASN][1000 genomes]
rs6594995	0.87[ASN][1000 genomes]
rs6594996	0.85[ASN][1000 genomes]
rs6595001	0.84[ASN][1000 genomes]
rs7701572	0.87[ASN][1000 genomes]
rs7716867	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1020292	chr5:116183712-116349633	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv1033379	chr5:116244963-116464338	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv1016586	chr5:116317968-116377074	Weak transcription ZNF genes & repeats Enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv1028067	chr5:116340955-116427869	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv4970	chr5:116345489-116390583	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:116348400-116349400	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr5:116349000-116349400	Enhancers	HUES64 Cell Line	embryonic stem cell
3	chr5:116349000-116349600	Enhancers	ES-I3 Cell Line	embryonic stem cell
4	chr5:116349000-116349600	Enhancers	H1 Cell Line	embryonic stem cell
5	chr5:116349000-116349600	Enhancers	iPS-15b Cell Line	embryonic stem cell
6	chr5:116349200-116349600	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr5:116349200-116349600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr5:116349200-116349600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr5:116349200-116349600	Enhancers	HUES6 Cell Line	embryonic stem cell
10	chr5:116349200-116349600	Enhancers	iPS-18 Cell Line	embryonic stem cell
11	chr5:116349200-116349600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr5:116349200-116349600	Enhancers	Esophagus	oesophagus
13	chr5:116349200-116349800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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