Variant report

Variant	rs71583703
Chromosome Location	chr11:64534562-64534563
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:64478005..64481824-chr11:64534394..64538447,4	K562	blood:
2	chr11:64534108..64536503-chr11:64654946..64656534,2	K562	blood:
3	chr11:64507790..64516181-chr11:64524582..64537783,30	K562	blood:

Variant related genes	Relation type
ENSG00000110076	Chromatin interaction
ENSG00000068831	Chromatin interaction
ENSG00000110047	Chromatin interaction

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11231863	1.00[EUR][1000 genomes]
rs12269866	1.00[EUR][1000 genomes]
rs12271728	1.00[EUR][1000 genomes]
rs12278771	1.00[EUR][1000 genomes]
rs12280878	1.00[EUR][1000 genomes]
rs12285502	1.00[EUR][1000 genomes]
rs17146417	1.00[EUR][1000 genomes]
rs71526475	1.00[EUR][1000 genomes]
rs71579856	1.00[EUR][1000 genomes]
rs71579878	1.00[EUR][1000 genomes]
rs71581770	1.00[EUR][1000 genomes]
rs71581787	1.00[EUR][1000 genomes]
rs7927181	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:19 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv897694	chr11:64334114-64584959	Weak transcription Bivalent/Poised TSS Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Active TSS Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	83 gene(s)	inside rSNPs	diseases
2	nsv818842	chr11:64345448-64546391	Bivalent Enhancer Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	75 gene(s)	inside rSNPs	diseases
3	nsv528506	chr11:64345448-64701030	Strong transcription Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1075 gene(s)	inside rSNPs	diseases
4	nsv555196	chr11:64357072-64559898	Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	77 gene(s)	inside rSNPs	diseases
5	nsv897695	chr11:64357072-64701030	Weak transcription Genic enhancers Enhancers Active TSS Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1075 gene(s)	inside rSNPs	diseases
6	nsv555198	chr11:64373899-64573589	Weak transcription Transcr. at gene 5' and 3' Genic enhancers Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
7	esv1804443	chr11:64386453-64534785	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
8	nsv897697	chr11:64447420-64584959	Flanking Bivalent TSS/Enh Weak transcription Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	79 gene(s)	inside rSNPs	diseases
9	nsv897698	chr11:64447420-64621573	Active TSS Bivalent Enhancer Genic enhancers Enhancers Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	82 gene(s)	inside rSNPs	diseases
10	nsv897699	chr11:64447420-64638041	Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Strong transcription Enhancers Weak transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	83 gene(s)	inside rSNPs	diseases
11	nsv897700	chr11:64447420-64701030	Flanking Active TSS Enhancers Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1071 gene(s)	inside rSNPs	diseases
12	nsv555202	chr11:64477050-64573589	Strong transcription Bivalent/Poised TSS Enhancers Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
13	nsv468597	chr11:64477050-64584959	Enhancers Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	77 gene(s)	inside rSNPs	diseases
14	nsv468598	chr11:64477050-64584959	Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Active TSS Enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	77 gene(s)	inside rSNPs	diseases
15	nsv555203	chr11:64477050-64584959	Strong transcription Genic enhancers Bivalent Enhancer Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	77 gene(s)	inside rSNPs	diseases
16	nsv1049744	chr11:64486615-64630149	Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Active TSS Weak transcription Enhancers Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	79 gene(s)	inside rSNPs	diseases
17	nsv832189	chr11:64487183-64620199	Weak transcription Transcr. at gene 5' and 3' Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	79 gene(s)	inside rSNPs	diseases
18	nsv469962	chr11:64527080-64621573	Flanking Active TSS Enhancers Weak transcription Genic enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	72 gene(s)	inside rSNPs	diseases
19	nsv897702	chr11:64532579-64584231	Transcr. at gene 5' and 3' Strong transcription Weak transcription Genic enhancers Flanking Active TSS Enhancers Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:64527400-64539600	Genic enhancers	Primary B cells from peripheral blood	blood
2	chr11:64527600-64534600	Weak transcription	Fetal Brain Male	brain
3	chr11:64528000-64536400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr11:64528200-64543600	Strong transcription	Fetal Intestine Small	intestine
5	chr11:64529600-64534800	Genic enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr11:64529600-64543200	Genic enhancers	Breast Myoepithelial Primary Cells	Breast
7	chr11:64529800-64536000	Genic enhancers	Fetal Thymus	thymus
8	chr11:64529800-64537800	Genic enhancers	Dnd41	blood
9	chr11:64529800-64539400	Strong transcription	Liver	Liver
10	chr11:64529800-64543200	Strong transcription	Fetal Brain Female	brain
11	chr11:64529800-64543600	Strong transcription	Fetal Lung	lung
12	chr11:64529800-64543600	Strong transcription	Rectal Mucosa Donor 31	rectum
13	chr11:64530000-64541200	Strong transcription	Aorta	Aorta
14	chr11:64530000-64543400	Strong transcription	Fetal Intestine Large	intestine
15	chr11:64530200-64534600	Strong transcription	Lung	lung
16	chr11:64530200-64540200	Strong transcription	Sigmoid Colon	Sigmoid Colon
17	chr11:64530400-64543000	Strong transcription	Hela-S3	cervix
18	chr11:64530400-64544200	Strong transcription	Placenta Amnion	Placenta Amnion
19	chr11:64530600-64544400	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr11:64530800-64535000	Genic enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
21	chr11:64531000-64536400	Genic enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
22	chr11:64531200-64535600	Genic enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
23	chr11:64531200-64535800	Genic enhancers	H1 Cell Line	embryonic stem cell
24	chr11:64531400-64535400	Genic enhancers	ES-UCSF4 Cell Line	embryonic stem cell
25	chr11:64531400-64535800	Genic enhancers	HUES6 Cell Line	embryonic stem cell
26	chr11:64531400-64538600	Strong transcription	Esophagus	oesophagus
27	chr11:64531400-64542600	Strong transcription	Gastric	stomach
28	chr11:64531400-64543600	Strong transcription	NHDF-Ad	bronchial
29	chr11:64531600-64540400	Strong transcription	HepG2	liver
30	chr11:64531600-64542800	Strong transcription	K562	blood
31	chr11:64531800-64534600	Strong transcription	Brain Inferior Temporal Lobe	brain
32	chr11:64531800-64535600	Genic enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
33	chr11:64531800-64535600	Genic enhancers	Brain Anterior Caudate	brain
34	chr11:64531800-64535800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
35	chr11:64531800-64535800	Genic enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
36	chr11:64531800-64539200	Strong transcription	Pancreas	Pancrea
37	chr11:64531800-64539400	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
38	chr11:64531800-64539600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
39	chr11:64531800-64540400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
40	chr11:64531800-64541000	Strong transcription	Small Intestine	intestine
41	chr11:64532000-64534800	Strong transcription	Brain Substantia Nigra	brain
42	chr11:64532000-64536000	Genic enhancers	Primary Natural Killer cells fromperipheralblood	blood
43	chr11:64532000-64539000	Strong transcription	HSMMtube	muscle
44	chr11:64532000-64539600	Strong transcription	Adipose Nuclei	Adipose
45	chr11:64532000-64539800	Strong transcription	Stomach Mucosa	stomach
46	chr11:64532000-64542800	Strong transcription	Brain Germinal Matrix	brain
47	chr11:64532000-64543000	Weak transcription	Right Atrium	heart
48	chr11:64532000-64543600	Strong transcription	HSMM	muscle
49	chr11:64532000-64543800	Strong transcription	Osteobl	bone
50	chr11:64532000-64544000	Strong transcription	Colonic Mucosa	Colon

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