Variant report
| Variant | rs71588000 |
|---|---|
| Chromosome Location | chr5:128288382-128288383 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:33)
| rs_ID | r2[population] |
|---|---|
| rs13166325 | 0.82[AMR][1000 genomes] |
| rs1898543 | 0.80[AFR][1000 genomes] |
| rs1898544 | 0.80[AFR][1000 genomes];0.82[AMR][1000 genomes] |
| rs1898549 | 0.82[AMR][1000 genomes] |
| rs2526209 | 0.82[AMR][1000 genomes] |
| rs2526210 | 0.82[AMR][1000 genomes] |
| rs2526211 | 0.82[AMR][1000 genomes] |
| rs2526212 | 0.80[AFR][1000 genomes];0.82[AMR][1000 genomes] |
| rs2526213 | 0.80[AFR][1000 genomes];0.82[AMR][1000 genomes] |
| rs2526214 | 0.80[AFR][1000 genomes];0.82[AMR][1000 genomes] |
| rs2526225 | 0.81[AMR][1000 genomes] |
| rs2526239 | 0.81[AMR][1000 genomes] |
| rs2577399 | 0.80[AFR][1000 genomes];0.81[AMR][1000 genomes] |
| rs2577402 | 0.81[AFR][1000 genomes];0.82[AMR][1000 genomes] |
| rs2577529 | 0.81[AMR][1000 genomes] |
| rs2577555 | 0.82[AMR][1000 genomes] |
| rs2577556 | 0.82[AMR][1000 genomes] |
| rs2577560 | 0.80[AFR][1000 genomes];0.82[AMR][1000 genomes] |
| rs2577561 | 0.80[AFR][1000 genomes];0.82[AMR][1000 genomes] |
| rs2577562 | 0.80[AFR][1000 genomes];0.82[AMR][1000 genomes] |
| rs34075274 | 0.82[AMR][1000 genomes] |
| rs34299037 | 0.81[AFR][1000 genomes];0.82[AMR][1000 genomes] |
| rs34683252 | 0.82[AMR][1000 genomes] |
| rs34813132 | 0.82[AMR][1000 genomes] |
| rs34831887 | 0.82[AMR][1000 genomes] |
| rs35044703 | 0.82[AMR][1000 genomes] |
| rs35388070 | 0.81[AFR][1000 genomes];0.82[AMR][1000 genomes] |
| rs35696888 | 0.82[AMR][1000 genomes] |
| rs36147677 | 0.80[AFR][1000 genomes] |
| rs62391297 | 0.82[AMR][1000 genomes] |
| rs71587998 | 0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs71587999 | 0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs71592877 | 0.82[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv462443 | chr5:128172808-128298437 | Enhancers Weak transcription Flanking Active TSS Active TSS | TF binding regionCpG islandChromatin interactive region | 4 gene(s) | inside rSNPs | diseases |
| 2 | nsv599700 | chr5:128172808-128298437 | Enhancers Weak transcription Flanking Active TSS Active TSS | TF binding regionCpG islandChromatin interactive region | 4 gene(s) | inside rSNPs | diseases |
| 3 | nsv882839 | chr5:128205828-128390167 | Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats | TF binding regionCpG islandChromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
| 4 | nsv882840 | chr5:128205828-128428962 | Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr5:128287800-128288400 | Enhancers | Placenta Amnion | Placenta Amnion |
