Variant report

Variant	rs7159441
Chromosome Location	chr14:56675683-56675684
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:56675081..56677798-chr14:56689013..56691356,2	MCF-7	breast:
2	chr14:56664921..56668726-chr14:56673424..56676785,5	K562	blood:
3	chr14:56662437..56665407-chr14:56673840..56677281,3	K562	blood:

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs17091123	0.87[AFR][1000 genomes]
rs242412	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs58116791	0.90[AFR][1000 genomes]
rs6573086	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533129	chr14:56568535-56819234	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	esv1844788	chr14:56594420-56771207	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:60 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:56662600-56677600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr14:56662600-56693000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
3	chr14:56662800-56677400	Weak transcription	Right Atrium	heart
4	chr14:56662800-56683400	Weak transcription	Fetal Stomach	stomach
5	chr14:56663200-56679000	Weak transcription	Fetal Brain Female	brain
6	chr14:56665400-56691600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr14:56667200-56683400	Weak transcription	NHDF-Ad	bronchial
8	chr14:56667400-56677400	Weak transcription	Skeletal Muscle Female	skeletal muscle
9	chr14:56669200-56681200	Weak transcription	Brain Inferior Temporal Lobe	brain
10	chr14:56669400-56677800	Weak transcription	Brain Hippocampus Middle	brain
11	chr14:56669600-56681200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr14:56672200-56677400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr14:56672600-56676400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr14:56672600-56677800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
15	chr14:56672600-56679000	Weak transcription	Gastric	stomach
16	chr14:56672600-56679200	Weak transcription	Spleen	Spleen
17	chr14:56672800-56677400	Weak transcription	Brain Cingulate Gyrus	brain
18	chr14:56672800-56677400	Weak transcription	Brain Substantia Nigra	brain
19	chr14:56672800-56683000	Weak transcription	Fetal Lung	lung
20	chr14:56673000-56677000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
21	chr14:56673000-56677400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
22	chr14:56673000-56677800	Weak transcription	Adipose Nuclei	Adipose
23	chr14:56673000-56682000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
24	chr14:56673000-56682800	Weak transcription	Duodenum Smooth Muscle	Duodenum
25	chr14:56673000-56683000	Weak transcription	Fetal Kidney	kidney
26	chr14:56673000-56694600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
27	chr14:56673200-56677200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
28	chr14:56673200-56677600	Weak transcription	Brain Anterior Caudate	brain
29	chr14:56673200-56678400	Weak transcription	Cortex derived primary cultured neurospheres	brain
30	chr14:56673400-56677400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
31	chr14:56673400-56677400	Weak transcription	Primary hematopoietic stem cells	blood
32	chr14:56673400-56683200	Weak transcription	Monocytes-CD14+_RO01746	blood
33	chr14:56673400-56694600	Weak transcription	Primary B cells from cord blood	blood
34	chr14:56673600-56677800	Weak transcription	Brain Angular Gyrus	brain
35	chr14:56673800-56679200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
36	chr14:56673800-56682800	Weak transcription	Primary neutrophils fromperipheralblood	blood
37	chr14:56673800-56683200	Weak transcription	Primary monocytes fromperipheralblood	blood
38	chr14:56673800-56683200	Weak transcription	Pancreatic Islets	Pancreatic Islet
39	chr14:56673800-56683600	Weak transcription	Stomach Mucosa	stomach
40	chr14:56674200-56677800	Enhancers	Dnd41	blood
41	chr14:56675000-56677400	Weak transcription	Left Ventricle	heart
42	chr14:56675000-56677800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
43	chr14:56675000-56678600	Weak transcription	Thymus	Thymus
44	chr14:56675000-56679000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
45	chr14:56675000-56679000	Weak transcription	Lung	lung
46	chr14:56675000-56679200	Weak transcription	Colon Smooth Muscle	Colon
47	chr14:56675000-56683200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
48	chr14:56675000-56686800	Weak transcription	Aorta	Aorta
49	chr14:56675200-56676400	Weak transcription	Small Intestine	intestine
50	chr14:56675200-56677400	Weak transcription	Pancreas	Pancrea

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