Variant report

Variant	rs71597855
Chromosome Location	chr4:54656437-54656438
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs34589159	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879015	chr4:54596466-54665559	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
2	nsv879016	chr4:54638218-54710952	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
3	esv19126	chr4:54653249-54709054	Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv1014792	chr4:54655382-54768963	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv537095	chr4:54655382-54768963	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:54653600-54657400	Weak transcription	Osteobl	bone
2	chr4:54653600-54659000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr4:54654400-54659000	Weak transcription	HSMMtube	muscle
4	chr4:54654600-54657200	Weak transcription	NHDF-Ad	bronchial
5	chr4:54655200-54657400	Enhancers	Brain Cingulate Gyrus	brain
6	chr4:54655600-54657800	Enhancers	Brain Substantia Nigra	brain
7	chr4:54655800-54657600	Enhancers	Brain Hippocampus Middle	brain
8	chr4:54656200-54657000	Enhancers	Brain Anterior Caudate	brain
9	chr4:54656200-54657200	Enhancers	Brain Angular Gyrus	brain
10	chr4:54656200-54657200	Enhancers	Brain Inferior Temporal Lobe	brain
11	chr4:54656400-54656600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
12	chr4:54656400-54656800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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