Variant report

Variant	rs7159891
Chromosome Location	chr14:24909400-24909401
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:13)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:13 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr14:24801605..24806320-chr14:24904693..24909744,5	K562	blood:
2	chr14:24816528..24849574-chr14:24893305..24914155,145	MCF-7	breast:
3	chr14:24789439..24822082-chr14:24898039..24913135,99	MCF-7	breast:
4	chr14:24909091..24910881-chr4:187644537..187646251,2	MCF-7	breast:
5	chr14:24872891..24878220-chr14:24906746..24909504,4	MCF-7	breast:
6	chr14:24791358..24808812-chr14:24895309..24913599,55	K562	blood:
7	chr14:24738558..24740532-chr14:24907754..24910468,2	MCF-7	breast:
8	chr14:24796552..24799266-chr14:24908909..24911628,3	K562	blood:
9	chr14:24783396..24785005-chr14:24908424..24911111,2	K562	blood:
10	chr14:24698279..24701346-chr14:24909291..24912292,3	MCF-7	breast:
11	chr14:24827418..24850855-chr14:24894884..24913772,127	MCF-7	breast:
12	chr14:24781460..24810019-chr14:24892340..24914262,110	MCF-7	breast:
13	chr14:24860779..24862341-chr14:24908273..24910091,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000258973	Chromatin interaction
ENSG00000207141	Chromatin interaction
ENSG00000083857	Chromatin interaction
ENSG00000129559	Chromatin interaction
ENSG00000213903	Chromatin interaction
ENSG00000129467	Chromatin interaction
ENSG00000100968	Chromatin interaction
ENSG00000129465	Chromatin interaction
ENSG00000100949	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10136223	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10144784	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10145085	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10145107	1.00[AMR][1000 genomes]
rs10148130	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10150240	1.00[AMR][1000 genomes]
rs10150494	1.00[AMR][1000 genomes]
rs28692861	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7144976	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs7157364	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7157920	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7159286	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1041336	chr14:24726564-25527319	Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
2	nsv542000	chr14:24726564-25527319	Genic enhancers Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
3	nsv1053330	chr14:24908047-24993666	Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Weak transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	n/a
4	nsv482171	chr14:24908974-24912007	Genic enhancers Active TSS Weak transcription Strong transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA target site	40 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:142 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:24900200-24911000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr14:24900600-24910600	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr14:24901400-24910200	Strong transcription	Aorta	Aorta
4	chr14:24901600-24909800	Weak transcription	Fetal Heart	heart
5	chr14:24901600-24910400	Strong transcription	Placenta Amnion	Placenta Amnion
6	chr14:24901800-24910000	Strong transcription	Sigmoid Colon	Sigmoid Colon
7	chr14:24902200-24909400	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr14:24902400-24909400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr14:24902400-24909800	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr14:24902400-24910200	Strong transcription	A549	lung
11	chr14:24902400-24910600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr14:24903000-24910000	Weak transcription	Psoas Muscle	Psoas
13	chr14:24903000-24910000	Strong transcription	NHEK	skin
14	chr14:24903400-24909600	Strong transcription	Foreskin Melanocyte Primary Cells skin01	Skin
15	chr14:24904200-24910200	Genic enhancers	Skeletal Muscle Female	skeletal muscle
16	chr14:24904400-24910400	Genic enhancers	Adipose Nuclei	Adipose
17	chr14:24904600-24910400	Strong transcription	Fetal Lung	lung
18	chr14:24904800-24910400	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
19	chr14:24905400-24910000	Genic enhancers	Primary monocytes fromperipheralblood	blood
20	chr14:24905400-24910600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr14:24905400-24910600	Strong transcription	HUES6 Cell Line	embryonic stem cell
22	chr14:24905400-24911000	Genic enhancers	Fetal Adrenal Gland	Adrenal Gland
23	chr14:24905800-24910600	Strong transcription	HSMM	muscle
24	chr14:24906000-24909400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
25	chr14:24906000-24909400	Strong transcription	Muscle Satellite Cultured Cells	--
26	chr14:24906000-24910000	Strong transcription	Fetal Intestine Small	intestine
27	chr14:24906000-24910200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
28	chr14:24906000-24910400	Strong transcription	Rectal Mucosa Donor 29	rectum
29	chr14:24906000-24910400	Strong transcription	Osteobl	bone
30	chr14:24906200-24909400	Strong transcription	Cortex derived primary cultured neurospheres	brain
31	chr14:24906200-24909800	Strong transcription	HepG2	liver
32	chr14:24906200-24910400	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
33	chr14:24906200-24910400	Genic enhancers	Spleen	Spleen
34	chr14:24906200-24910600	Strong transcription	HUES48 Cell Line	embryonic stem cell
35	chr14:24906400-24909400	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
36	chr14:24906400-24909600	Strong transcription	Brain Angular Gyrus	brain
37	chr14:24906400-24909800	Strong transcription	Brain Cingulate Gyrus	brain
38	chr14:24906400-24909800	Strong transcription	Brain Substantia Nigra	brain
39	chr14:24906400-24909800	Strong transcription	Fetal Intestine Large	intestine
40	chr14:24906400-24910200	Strong transcription	H1 Cell Line	embryonic stem cell
41	chr14:24906400-24910400	Strong transcription	Rectal Smooth Muscle	rectum
42	chr14:24906400-24910600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
43	chr14:24906600-24910200	Strong transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
44	chr14:24906600-24910200	Strong transcription	H9 Cell Line	embryonic stem cell
45	chr14:24906800-24909400	Strong transcription	Colonic Mucosa	Colon
46	chr14:24906800-24909400	Strong transcription	Duodenum Mucosa	Duodenum
47	chr14:24906800-24909400	Strong transcription	K562	blood
48	chr14:24906800-24909600	Strong transcription	Fetal Brain Male	brain
49	chr14:24906800-24910000	Strong transcription	iPS-18 Cell Line	embryonic stem cell
50	chr14:24906800-24910000	Strong transcription	Fetal Stomach	stomach

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