Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10143830	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs12432330	1.00[CEU][hapmap]
rs12432570	1.00[CEU][hapmap]
rs12435202	1.00[CEU][hapmap]
rs12435673	1.00[CEU][hapmap]
rs12436315	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs12436495	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs12436701	1.00[ASN][1000 genomes]
rs17109476	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4594158	1.00[CEU][hapmap]
rs59708545	1.00[ASN][1000 genomes]
rs72688028	1.00[ASN][1000 genomes]
rs72688032	1.00[ASN][1000 genomes]
rs72688034	1.00[ASN][1000 genomes]
rs72688037	1.00[ASN][1000 genomes]
rs72688040	1.00[ASN][1000 genomes]
rs72688046	1.00[ASN][1000 genomes]
rs72688047	1.00[ASN][1000 genomes]
rs72688051	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72688054	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1042309	chr14:22042511-22866936	Flanking Active TSS Enhancers Weak transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	90 gene(s)	inside rSNPs	diseases
2	nsv456147	chr14:22073473-22305071	Enhancers Bivalent Enhancer Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
3	nsv563851	chr14:22073473-22305071	Active TSS Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
4	nsv510629	chr14:22134425-22215842	Weak transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:22170400-22173600	Enhancers	Rectal Mucosa Donor 31	rectum
2	chr14:22171800-22172800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
3	chr14:22171800-22172800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
4	chr14:22171800-22172800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
5	chr14:22171800-22173200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
6	chr14:22172000-22173000	Enhancers	Primary T helper cells PMA-I stimulated	--
7	chr14:22172000-22173000	Enhancers	Primary T helper cells fromperipheralblood	blood
8	chr14:22172000-22173000	Enhancers	Primary T regulatory cells fromperipheralblood	blood
9	chr14:22172000-22173200	Enhancers	Primary T helper naive cells from peripheral blood	blood
10	chr14:22172200-22173600	Enhancers	Primary neutrophils fromperipheralblood	blood
11	chr14:22172400-22172800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr14:22172400-22172800	Enhancers	Rectal Mucosa Donor 29	rectum
13	chr14:22172600-22180600	Weak transcription	Primary T killer memory cells from peripheral blood	blood

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