Variant report

Variant	rs7160198
Chromosome Location	chr14:65633561-65633562
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs11621526	0.81[JPT][hapmap]
rs11625166	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4899167	0.81[JPT][hapmap]
rs7145931	0.85[CEU][hapmap]
rs8017456	0.81[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832816	chr14:65473244-65644645	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:65624000-65637000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr14:65624000-65637200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr14:65625400-65637200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr14:65626000-65637200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr14:65626400-65637200	Weak transcription	Esophagus	oesophagus
6	chr14:65627200-65637000	Weak transcription	Primary B cells from cord blood	blood
7	chr14:65631400-65634000	Weak transcription	Brain Cingulate Gyrus	brain
8	chr14:65631600-65633600	Weak transcription	Primary B cells from peripheral blood	blood
9	chr14:65631600-65635000	Weak transcription	Brain Inferior Temporal Lobe	brain
10	chr14:65631600-65635000	Weak transcription	Brain Substantia Nigra	brain
11	chr14:65631600-65635600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
12	chr14:65631800-65637200	Weak transcription	Fetal Intestine Large	intestine
13	chr14:65631800-65637200	Weak transcription	Fetal Intestine Small	intestine
14	chr14:65632000-65636000	Weak transcription	HepG2	liver
15	chr14:65632800-65635600	Enhancers	GM12878-XiMat	blood
16	chr14:65633000-65636000	Enhancers	Brain Hippocampus Middle	brain
17	chr14:65633400-65633600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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