Variant report

Variant	rs71603067
Chromosome Location	chr4:111214522-111214523
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs13105073	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34839006	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35499292	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71603069	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869392	chr4:110945459-111235071	Flanking Active TSS Weak transcription Strong transcription Active TSS Enhancers Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:111209200-111214600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr4:111214000-111214600	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr4:111214400-111214800	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr4:111214400-111215000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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