Variant report

Variant	rs7160652
Chromosome Location	chr14:56698044-56698045
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11849649	0.89[AMR][1000 genomes]
rs12589228	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs36146453	0.85[AMR][1000 genomes]
rs36155724	0.81[AMR][1000 genomes]
rs36158476	0.88[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs36169953	0.86[AMR][1000 genomes]
rs36171593	0.86[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs5008735	0.81[AMR][1000 genomes]
rs5008737	0.88[AMR][1000 genomes]
rs55916872	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7140289	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7155890	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533129	chr14:56568535-56819234	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	esv1844788	chr14:56594420-56771207	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv1044886	chr14:56689682-56834648	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv542104	chr14:56689682-56834648	Weak transcription Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:56682200-56699200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
2	chr14:56686800-56702000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr14:56688000-56707800	Weak transcription	Spleen	Spleen
4	chr14:56689600-56699200	Weak transcription	Primary T helper cells fromperipheralblood	blood
5	chr14:56689600-56710000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr14:56689800-56715800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
7	chr14:56692400-56703000	Weak transcription	Aorta	Aorta
8	chr14:56692400-56710000	Weak transcription	Fetal Stomach	stomach
9	chr14:56692600-56701400	Weak transcription	Ovary	ovary
10	chr14:56692600-56703200	Weak transcription	Monocytes-CD14+_RO01746	blood
11	chr14:56692800-56699200	Weak transcription	Stomach Mucosa	stomach
12	chr14:56693000-56704000	Weak transcription	Primary T cells from cord blood	blood
13	chr14:56693200-56703000	Weak transcription	Primary neutrophils fromperipheralblood	blood
14	chr14:56693200-56724400	Weak transcription	Gastric	stomach
15	chr14:56694000-56701600	Weak transcription	Pancreas	Pancrea
16	chr14:56694000-56723000	Weak transcription	Lung	lung
17	chr14:56695200-56702200	Weak transcription	Dnd41	blood
18	chr14:56696000-56703200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
19	chr14:56696000-56706400	Weak transcription	Thymus	Thymus
20	chr14:56696000-56715600	Weak transcription	Fetal Thymus	thymus
21	chr14:56696800-56703000	Weak transcription	H1 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links