Variant report

Variant	rs7160841
Chromosome Location	chr14:37414154-37414155
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:37413981..37415781-chr14:37417147..37418883,2	MCF-7	breast:

Extended variants
information (count: 4 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs1156169	0.83[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1047290	chr14:36564568-37445157	Weak transcription Enhancers Bivalent/Poised TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	43 gene(s)	inside rSNPs	diseases
2	nsv534288	chr14:37254539-37697745	Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
3	nsv1050254	chr14:37400173-37445157	Weak transcription Enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7160841	SEC23A	cis	parietal	SCAN

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:37411400-37414600	Enhancers	Muscle Satellite Cultured Cells	--
2	chr14:37412000-37414600	Enhancers	HMEC	breast
3	chr14:37413400-37414200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr14:37413400-37414200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr14:37413400-37414200	Enhancers	A549	lung
6	chr14:37413400-37414400	Enhancers	HSMM	muscle
7	chr14:37413400-37414600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr14:37413400-37414600	Enhancers	NHLF	lung
9	chr14:37413400-37414800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr14:37413600-37414200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr14:37413600-37414200	Enhancers	NH-A	brain
12	chr14:37413600-37414400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr14:37413600-37414400	Enhancers	Osteobl	bone
14	chr14:37413600-37414600	Enhancers	NHEK	skin
15	chr14:37413800-37414200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr14:37413800-37414200	Active TSS	NHDF-Ad	bronchial
17	chr14:37413800-37414400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr14:37413800-37414400	Enhancers	K562	blood
19	chr14:37413800-37437400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr14:37414000-37414200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr14:37414000-37414800	Enhancers	Hela-S3	cervix
22	chr14:37414000-37420000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung

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