Variant report

Variant	rs71611463
Chromosome Location	chr5:178258716-178258717
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:178250159..178253046-chr5:178256116..178259012,3	MCF-7	breast:
2	chr5:178228775..178231759-chr5:178257850..178260513,2	MCF-7	breast:
3	chr5:178258610..178261483-chr5:178285999..178288925,2	K562	blood:

Variant related genes	Relation type
ENSG00000178338	Chromatin interaction

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs11249580	0.83[AMR][1000 genomes]
rs11249581	0.81[EUR][1000 genomes]
rs11249583	0.80[EUR][1000 genomes]
rs11249584	0.81[EUR][1000 genomes]
rs11738631	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11741533	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs11747490	0.85[AMR][1000 genomes]
rs11750068	0.85[AMR][1000 genomes]
rs11750817	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11952453	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12153245	0.80[EUR][1000 genomes]
rs13162024	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs13163348	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13173488	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs13173515	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs13174478	0.80[AMR][1000 genomes]
rs13174626	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs13174654	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs13181764	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs13183235	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13183254	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13187283	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs34030500	0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs34124262	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs34325875	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs34798599	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs34905117	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs35070400	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs35316460	0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs35429406	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs35721293	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs35854619	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs55641255	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs55773401	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs67009518	0.84[AMR][1000 genomes]
rs67741599	0.83[AMR][1000 genomes]
rs71611464	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs71611465	0.84[AMR][1000 genomes]
rs72814640	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72814653	0.83[ASN][1000 genomes]
rs72814655	0.85[AFR][1000 genomes];0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72814656	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7708433	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7722023	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1031206	chr5:178149292-178283614	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv537973	chr5:178149292-178283614	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv883218	chr5:178219855-178349391	Strong transcription Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	nsv968861	chr5:178251700-178275142	Weak transcription Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
5	nsv600453	chr5:178252366-178259787	Enhancers Active TSS ZNF genes & repeats Weak transcription Strong transcription Bivalent Enhancer Flanking Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	nsv600454	chr5:178257859-178259891	Weak transcription Active TSS Enhancers ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	esv12110	chr5:178258606-178260382	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	nsv820511	chr5:178258606-178260382	Weak transcription Active TSS Flanking Active TSS Enhancers ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
9	esv18838	chr5:178258606-178266167	ZNF genes & repeats Active TSS Flanking Active TSS Enhancers Weak transcription	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
10	esv3519080	chr5:178258707-178259283	Active TSS ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
11	esv3519081	chr5:178258707-178259283	ZNF genes & repeats Weak transcription Active TSS Enhancers Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:178254000-178259400	Weak transcription	HUES64 Cell Line	embryonic stem cell
2	chr5:178254200-178259400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr5:178257200-178259200	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr5:178257200-178259400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr5:178257600-178259400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr5:178257800-178258800	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
7	chr5:178258200-178259800	Active TSS	iPS-18 Cell Line	embryonic stem cell
8	chr5:178258200-178260000	Active TSS	ES-I3 Cell Line	embryonic stem cell
9	chr5:178258400-178258800	Flanking Active TSS	K562	blood
10	chr5:178258600-178259800	Active TSS	iPS-20b Cell Line	embryonic stem cell

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