Variant report

Variant	rs7161502
Chromosome Location	chr14:55679671-55679672
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:55679501..55680006-chr14:55737665..55738471,2	MCF-7	breast:
2	chr14:55678786..55680522-chr14:55737916..55739440,2	MCF-7	breast:
3	chr14:55678554..55682853-chr14:55737022..55740091,3	K562	blood:
4	chr14:55679230..55681659-chr14:55700930..55702648,2	MCF-7	breast:
5	chr14:55679463..55680489-chr14:55896488..55897538,5	K562	blood:
6	chr14:55678337..55681530-chr14:55738296..55741228,5	K562	blood:
7	chr14:55679455..55680007-chr14:55821048..55821633,3	K562	blood:
8	chr14:55679464..55680429-chr14:55912644..55913465,2	K562	blood:

No data

No data

No data

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs17128292	0.81[AFR][1000 genomes]
rs17128303	0.84[AMR][1000 genomes]
rs1886784	0.81[AFR][1000 genomes]
rs1952086	0.84[AMR][1000 genomes]
rs2985914	0.82[AFR][1000 genomes]
rs3759666	0.81[AFR][1000 genomes]
rs56192604	0.81[AFR][1000 genomes]
rs60023093	0.85[AFR][1000 genomes]
rs60715972	0.82[AFR][1000 genomes]
rs7141563	0.81[AFR][1000 genomes]
rs7142831	0.83[AFR][1000 genomes]
rs7145502	0.81[AFR][1000 genomes]
rs7153418	0.84[AMR][1000 genomes]
rs7154368	0.81[AFR][1000 genomes]
rs7155936	0.81[AFR][1000 genomes]
rs7157585	0.81[AFR][1000 genomes]
rs7160575	0.85[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs7160753	0.83[AFR][1000 genomes]
rs74050920	0.80[AMR][1000 genomes]
rs74050932	0.81[AFR][1000 genomes]
rs74050937	0.81[AFR][1000 genomes]
rs8009009	0.81[AFR][1000 genomes]
rs8009060	0.81[AFR][1000 genomes]
rs8010751	0.81[AFR][1000 genomes]
rs8010791	0.81[AFR][1000 genomes]
rs8017821	0.82[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1035158	chr14:55638386-55684228	Active TSS Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:55677600-55679800	Weak transcription	Right Atrium	heart
2	chr14:55679200-55679800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr14:55679200-55680400	Enhancers	HMEC	breast
4	chr14:55679400-55679800	Enhancers	Breast Myoepithelial Primary Cells	Breast
5	chr14:55679400-55679800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr14:55679400-55679800	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr14:55679600-55679800	Flanking Active TSS	NHEK	skin
8	chr14:55679600-55680400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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