Variant report

Variant	rs7161586
Chromosome Location	chr14:64318899-64318900
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:64318775..64319715-chr6:26156466..26157229,2	Hela-S3	cervix:

Variant related genes	Relation type
ENSG00000168298	Chromatin interaction

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs1000904	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10873171	0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12435958	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12436656	0.92[AFR][1000 genomes];0.85[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs12587452	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12893838	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2151763	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2357001	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs34486661	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35234298	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs36050513	0.96[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs4902249	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4902251	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4902252	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs55925976	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs61985747	0.95[AFR][1000 genomes];0.80[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs61985748	0.81[ASN][1000 genomes]
rs6573532	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6573533	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6573535	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6573536	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs67106029	0.81[ASN][1000 genomes]
rs7144370	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7145302	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7145736	0.81[ASN][1000 genomes]
rs7145810	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7146469	0.81[ASN][1000 genomes]
rs7149609	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7150540	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7153723	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7158960	0.92[AFR][1000 genomes];0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs8004989	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs8009846	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs8010094	0.92[AFR][1000 genomes];0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs945031	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs951250	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv915909	chr14:63620440-64560369	Active TSS Genic enhancers Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
2	nsv1038825	chr14:64109441-64491720	Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
3	nsv1037140	chr14:64248421-64442980	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	nsv542119	chr14:64248421-64442980	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	esv3416242	chr14:64263248-64321769	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
6	esv3368767	chr14:64268248-64321769	Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
7	esv3355344	chr14:64268248-64323934	Active TSS Bivalent/Poised TSS Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
8	esv3341450	chr14:64318649-64321797	Bivalent Enhancer Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
9	esv3439844	chr14:64318824-64321372	Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:64312800-64319200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
2	chr14:64315600-64319000	Weak transcription	Left Ventricle	heart
3	chr14:64316000-64319000	Weak transcription	HUVEC	blood vessel
4	chr14:64316200-64319200	Weak transcription	Stomach Mucosa	stomach
5	chr14:64316600-64319000	Weak transcription	Adipose Nuclei	Adipose
6	chr14:64316600-64319000	Weak transcription	Ovary	ovary
7	chr14:64317200-64319000	Weak transcription	Right Ventricle	heart
8	chr14:64318800-64319000	Flanking Active TSS	H1 Cell Line	embryonic stem cell
9	chr14:64318800-64319000	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
10	chr14:64318800-64319000	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
11	chr14:64318800-64319000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
12	chr14:64318800-64319000	Enhancers	Breast Myoepithelial Primary Cells	Breast
13	chr14:64318800-64319000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
14	chr14:64318800-64319000	Enhancers	Primary T killer memory cells from peripheral blood	blood
15	chr14:64318800-64319000	Enhancers	Brain Substantia Nigra	brain
16	chr14:64318800-64319000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
17	chr14:64318800-64319000	Enhancers	Fetal Heart	heart
18	chr14:64318800-64319000	Enhancers	Fetal Stomach	stomach
19	chr14:64318800-64319000	Enhancers	Rectal Mucosa Donor 31	rectum
20	chr14:64318800-64319000	Enhancers	Skeletal Muscle Male	skeletal muscle
21	chr14:64318800-64319000	Enhancers	Stomach Smooth Muscle	stomach
22	chr14:64318800-64319000	Enhancers	Dnd41	blood
23	chr14:64318800-64319000	Enhancers	GM12878-XiMat	blood
24	chr14:64318800-64319000	Enhancers	Hela-S3	cervix
25	chr14:64318800-64319000	Enhancers	NHEK	skin
26	chr14:64318800-64319200	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
27	chr14:64318800-64319200	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
28	chr14:64318800-64319400	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
29	chr14:64318800-64319600	Active TSS	Fetal Lung	lung
30	chr14:64318800-64321000	Active TSS	HUES48 Cell Line	embryonic stem cell
31	chr14:64318800-64321200	Active TSS	H9 Cell Line	embryonic stem cell
32	chr14:64318800-64321400	Active TSS	ES-I3 Cell Line	embryonic stem cell
33	chr14:64318800-64321800	Active TSS	Fetal Kidney	kidney
34	chr14:64318800-64322600	Active TSS	Pancreatic Islets	Pancreatic Islet

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