Variant report

Variant	rs7161975
Chromosome Location	chr15:32967839-32967840
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs12050625	0.86[CHB][hapmap]
rs62001854	0.81[ASN][1000 genomes]
rs62001855	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62001856	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv431374	chr15:32008985-32976055	Weak transcription Active TSS Enhancers Flanking Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
2	esv2422296	chr15:32798938-33221215	Weak transcription Enhancers Strong transcription Genic enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
3	nsv469587	chr15:32821940-32986579	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
4	nsv482780	chr15:32821940-32986579	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
5	nsv456785	chr15:32926076-33352989	Genic enhancers Active TSS Weak transcription Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
6	nsv568913	chr15:32926076-33352989	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
7	nsv482680	chr15:32958401-33154005	Bivalent Enhancer Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Genic enhancers Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
8	nsv568915	chr15:32965357-32994056	Weak transcription Enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7161975	GREM1	cis	parietal	SCAN

Chromatin state (count:47 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:32952200-32972800	Weak transcription	Fetal Brain Female	brain
2	chr15:32956200-32973800	Weak transcription	HSMM	muscle
3	chr15:32957000-32968400	Weak transcription	Brain Germinal Matrix	brain
4	chr15:32961200-32976200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr15:32961200-32980200	Weak transcription	Thymus	Thymus
6	chr15:32961600-32969400	Weak transcription	NH-A	brain
7	chr15:32962600-32969400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr15:32962600-32969600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr15:32962800-32968200	Weak transcription	Cortex derived primary cultured neurospheres	brain
10	chr15:32963000-32968400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr15:32963000-32968400	Weak transcription	NHEK	skin
12	chr15:32963000-32974200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr15:32963200-32969600	Weak transcription	Hela-S3	cervix
14	chr15:32963400-32968400	Weak transcription	Liver	Liver
15	chr15:32963400-32969600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr15:32963600-32969400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr15:32963800-32968400	Weak transcription	HepG2	liver
18	chr15:32963800-32969400	Weak transcription	HUES6 Cell Line	embryonic stem cell
19	chr15:32964200-32969400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
20	chr15:32964600-32990800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
21	chr15:32964800-32968600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
22	chr15:32964800-32969000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr15:32964800-32993800	Weak transcription	Fetal Brain Male	brain
24	chr15:32965000-32969400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr15:32965000-32974000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
26	chr15:32965000-32983600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
27	chr15:32965400-32968000	Weak transcription	Brain Anterior Caudate	brain
28	chr15:32966600-32968000	Enhancers	NHDF-Ad	bronchial
29	chr15:32966600-32968400	Enhancers	Stomach Smooth Muscle	stomach
30	chr15:32966800-32968200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
31	chr15:32967000-32968600	Enhancers	Primary neutrophils fromperipheralblood	blood
32	chr15:32967000-32969600	Weak transcription	Esophagus	oesophagus
33	chr15:32967200-32968200	Enhancers	Monocytes-CD14+_RO01746	blood
34	chr15:32967400-32968600	Enhancers	Primary monocytes fromperipheralblood	blood
35	chr15:32967600-32968200	Enhancers	Muscle Satellite Cultured Cells	--
36	chr15:32967600-32968200	Enhancers	Osteobl	bone
37	chr15:32967600-32968400	Weak transcription	Primary B cells from cord blood	blood
38	chr15:32967600-32969400	Enhancers	A549	lung
39	chr15:32967800-32968000	Enhancers	Pancreatic Islets	Pancreatic Islet
40	chr15:32967800-32968200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
41	chr15:32967800-32968800	Enhancers	Brain Cingulate Gyrus	brain
42	chr15:32967800-32968800	Enhancers	Duodenum Smooth Muscle	Duodenum
43	chr15:32967800-32969800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
44	chr15:32967800-32969800	Enhancers	Brain Angular Gyrus	brain
45	chr15:32967800-32970000	Enhancers	Brain Hippocampus Middle	brain
46	chr15:32967800-32970200	Enhancers	Brain Inferior Temporal Lobe	brain
47	chr15:32967800-32970200	Enhancers	Brain Substantia Nigra	brain

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