Variant report

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	RUNX3	chr1:158303532-158303882	GM12878	blood:	n/a	n/a

Variant related genes	Relation type
CD1B	TF binding region

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10797006	0.80[CEU][hapmap]
rs10797008	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10908645	0.87[EUR][1000 genomes]
rs10908646	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10908647	0.96[ASN][1000 genomes]
rs11264950	0.84[EUR][1000 genomes]
rs11264952	0.86[EUR][1000 genomes]
rs11264963	0.84[EUR][1000 genomes]
rs11486132	0.82[EUR][1000 genomes]
rs11488686	0.87[EUR][1000 genomes]
rs12038925	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12095313	0.86[EUR][1000 genomes]
rs1575172	0.81[EUR][1000 genomes]
rs1923141	0.83[EUR][1000 genomes]
rs2317883	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3176842	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3176843	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs34591069	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs35752748	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs366316	0.80[CEU][hapmap]
rs4489554	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs59038586	0.81[ASN][1000 genomes]
rs60706492	0.92[ASN][1000 genomes]
rs73029766	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7539343	0.86[EUR][1000 genomes]
rs7543890	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999542	chr1:158015715-158368132	Bivalent Enhancer Genic enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Active TSS Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv872479	chr1:158118787-158484285	Active TSS Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
3	nsv872480	chr1:158153526-158450238	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
4	nsv831692	chr1:158223459-158392016	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:158301400-158304200	Active TSS	Thymus	Thymus
2	chr1:158302000-158305200	Flanking Active TSS	Dnd41	blood
3	chr1:158302400-158304600	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr1:158302400-158304600	Enhancers	Monocytes-CD14+_RO01746	blood
5	chr1:158302800-158306800	Enhancers	Primary B cells from peripheral blood	blood
6	chr1:158303000-158305000	Enhancers	Primary hematopoietic stem cells short term culture	blood
7	chr1:158303000-158305200	Enhancers	Primary B cells from cord blood	blood
8	chr1:158303200-158304800	Enhancers	GM12878-XiMat	blood
9	chr1:158303400-158304400	Active TSS	Fetal Thymus	thymus
10	chr1:158303600-158304800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
11	chr1:158303800-158304000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
12	chr1:158303800-158305400	Enhancers	Primary T cells from cord blood	blood

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