Variant report

Variant	rs7162322
Chromosome Location	chr15:60448111-60448112
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs55645196	0.85[AMR][1000 genomes]
rs57114112	0.85[AMR][1000 genomes]
rs57226066	0.85[AMR][1000 genomes]
rs58176868	0.85[AMR][1000 genomes]
rs58912585	0.85[AMR][1000 genomes]
rs59349307	0.80[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs59717057	0.85[AMR][1000 genomes]
rs60855487	0.85[AMR][1000 genomes]
rs60950768	0.85[AMR][1000 genomes]
rs73431276	0.85[AMR][1000 genomes]
rs73431286	0.85[AMR][1000 genomes]
rs73431302	0.85[AMR][1000 genomes]
rs73433203	0.85[AMR][1000 genomes]
rs73433205	0.85[AMR][1000 genomes]
rs73433216	0.85[AMR][1000 genomes]
rs73433218	0.87[AMR][1000 genomes]
rs73433221	0.85[AMR][1000 genomes]
rs73433273	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs74016932	0.85[AMR][1000 genomes]
rs74016933	0.85[AMR][1000 genomes]
rs74016937	0.85[AMR][1000 genomes]
rs74016940	0.85[AMR][1000 genomes]
rs74016941	0.85[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv904280	chr15:60042722-60524025	Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:60445600-60449400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr15:60446400-60452000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr15:60446600-60448400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr15:60446800-60448200	Enhancers	ES-I3 Cell Line	embryonic stem cell
5	chr15:60446800-60448200	Enhancers	HUES6 Cell Line	embryonic stem cell
6	chr15:60447000-60448400	Enhancers	HSMM	muscle
7	chr15:60447200-60448200	Enhancers	H1 Cell Line	embryonic stem cell
8	chr15:60447400-60448200	Enhancers	NHEK	skin
9	chr15:60447400-60448400	Bivalent Enhancer	Primary T helper memory cells from peripheral blood 1	blood
10	chr15:60447400-60448600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr15:60447600-60448200	Enhancers	Muscle Satellite Cultured Cells	--
12	chr15:60447600-60448200	Enhancers	HMEC	breast
13	chr15:60447600-60448400	Enhancers	Osteobl	bone
14	chr15:60447800-60448200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
15	chr15:60447800-60448200	Flanking Bivalent TSS/Enh	GM12878-XiMat	blood
16	chr15:60447800-60448400	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr15:60447800-60452000	Weak transcription	Placenta Amnion	Placenta Amnion
18	chr15:60447800-60453200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
19	chr15:60448000-60448200	Active TSS	NH-A	brain
20	chr15:60448000-60448400	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr15:60448000-60448400	Active TSS	NHDF-Ad	bronchial
22	chr15:60448000-60451800	Weak transcription	Placenta	Placenta
23	chr15:60448000-60453200	Weak transcription	HUES48 Cell Line	embryonic stem cell
24	chr15:60448000-60453200	Weak transcription	HUES64 Cell Line	embryonic stem cell
25	chr15:60448000-60453400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
26	chr15:60448000-60453400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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