Variant report

Variant	rs7162392
Chromosome Location	chr15:100099486-100099487
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:100014996..100017513-chr15:100098529..100100946,2	MCF-7	breast:
2	chr15:100096994..100100303-chr15:100101564..100104656,5	K562	blood:
3	chr15:100094623..100097105-chr15:100097734..100099750,2	MCF-7	breast:
4	chr15:100097900..100099742-chr15:100104669..100107331,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000068305	Chromatin interaction

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs1019974	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs11247119	0.91[CHB][hapmap];0.88[CHD][hapmap]
rs11852739	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12593522	0.95[CHB][hapmap];0.86[CHD][hapmap];1.00[JPT][hapmap]
rs12899961	0.93[ASN][1000 genomes]
rs12901291	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs12902009	0.83[ASN][1000 genomes]
rs12912791	0.95[CHB][hapmap];0.86[CHD][hapmap];1.00[JPT][hapmap]
rs12916000	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs1434232	0.89[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.91[TSI][hapmap];0.87[AMR][1000 genomes];0.80[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs167805	0.81[CHB][hapmap];0.91[JPT][hapmap]
rs170522	0.83[CHB][hapmap];1.00[JPT][hapmap]
rs188977	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs191256	0.82[CHB][hapmap];0.82[JPT][hapmap]
rs2033546	0.91[CHB][hapmap];0.88[CHD][hapmap]
rs2117309	0.85[CHB][hapmap]
rs2570807	0.87[ASN][1000 genomes]
rs2570808	1.00[CHB][hapmap];0.90[CHD][hapmap];1.00[JPT][hapmap]
rs2570816	0.90[CHB][hapmap];1.00[JPT][hapmap]
rs2570823	0.87[ASN][1000 genomes]
rs2570825	0.94[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs2581467	0.95[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs2581468	0.95[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs2581470	0.95[CHB][hapmap];0.83[CHD][hapmap];1.00[JPT][hapmap]
rs2902349	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs325381	0.82[JPT][hapmap]
rs325392	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs325404	0.85[CHB][hapmap];0.91[JPT][hapmap]
rs325409	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs325410	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs325411	0.81[CEU][hapmap];0.87[MEX][hapmap];0.85[TSI][hapmap]
rs325413	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs4405533	0.88[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs4421955	0.84[ASN][1000 genomes]
rs4424892	0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs7165899	1.00[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.96[LWK][hapmap];0.92[MKK][hapmap];0.82[TSI][hapmap];0.80[YRI][hapmap];0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs7496677	0.91[CHB][hapmap];0.88[CHD][hapmap]
rs892465	0.91[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv915926	chr15:99519820-100138705	Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
2	nsv817289	chr15:99621061-100138705	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
3	nsv431411	chr15:99621061-100143999	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
4	nsv904546	chr15:99696046-100166300	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Strong transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
5	nsv1036346	chr15:99752391-100365458	Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Enhancers Weak transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
6	nsv542520	chr15:99752391-100365458	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
7	nsv1051560	chr15:99837102-100124483	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
8	nsv817201	chr15:99839238-100537341	Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
9	nsv904558	chr15:100019382-100171684	ZNF genes & repeats Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:100088600-100105000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr15:100095400-100103800	Weak transcription	Fetal Heart	heart
3	chr15:100096400-100102800	Weak transcription	Skeletal Muscle Female	skeletal muscle
4	chr15:100096400-100103600	Weak transcription	Right Atrium	heart
5	chr15:100096600-100104000	Weak transcription	Fetal Muscle Leg	muscle
6	chr15:100097000-100102000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr15:100097000-100102400	Weak transcription	Primary hematopoietic stem cells	blood
8	chr15:100097600-100103600	Weak transcription	Primary B cells from cord blood	blood
9	chr15:100097600-100103800	Weak transcription	Primary B cells from peripheral blood	blood
10	chr15:100098400-100100000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr15:100099200-100104000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr15:100099200-100104000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr15:100099200-100105200	Weak transcription	Aorta	Aorta
14	chr15:100099400-100102800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr15:100099400-100104800	Weak transcription	HSMMtube	muscle

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