Variant report

Variant	rs71624982
Chromosome Location	chr4:55306268-55306269
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs11724169	0.81[ASN][1000 genomes]
rs17749557	0.81[ASN][1000 genomes]
rs7660758	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1008793	chr4:55060925-55535807	Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv537098	chr4:55060925-55535807	Enhancers Active TSS Genic enhancers Flanking Active TSS Bivalent/Poised TSS Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv999400	chr4:55143598-55776995	Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
4	nsv997430	chr4:55253397-55529288	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:55304800-55312200	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr4:55305400-55306600	Enhancers	Primary neutrophils fromperipheralblood	blood
3	chr4:55305400-55307000	Enhancers	Primary hematopoietic stem cells short term culture	blood
4	chr4:55305400-55307600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr4:55305600-55307200	Enhancers	Primary hematopoietic stem cells	blood
6	chr4:55305800-55306800	Active TSS	Adipose Nuclei	Adipose
7	chr4:55305800-55307200	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr4:55306000-55306400	Enhancers	Primary T cells from cord blood	blood
9	chr4:55306000-55306400	Enhancers	Fetal Kidney	kidney
10	chr4:55306000-55306600	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
11	chr4:55306000-55307000	Active TSS	Brain Anterior Caudate	brain
12	chr4:55306000-55307000	Active TSS	Ovary	ovary
13	chr4:55306000-55307200	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr4:55306000-55307200	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr4:55306000-55307200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr4:55306000-55307200	Active TSS	Brain Hippocampus Middle	brain
17	chr4:55306200-55306400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr4:55306200-55306400	Bivalent/Poised TSS	HSMM	muscle
19	chr4:55306200-55306600	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr4:55306200-55306600	Weak transcription	Monocytes-CD14+_RO01746	blood
21	chr4:55306200-55306800	Active TSS	NHLF	lung
22	chr4:55306200-55307000	Active TSS	Skeletal Muscle Male	skeletal muscle
23	chr4:55306200-55307000	Active TSS	NHDF-Ad	bronchial
24	chr4:55306200-55307200	Active TSS	Primary Natural Killer cells fromperipheralblood	blood
25	chr4:55306200-55307200	Active TSS	Skeletal Muscle Female	skeletal muscle
26	chr4:55306200-55307200	Active TSS	Osteobl	bone

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