Variant report

Variant	rs7162507
Chromosome Location	chr15:55514195-55514196
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:55513816..55516260-chr15:55529829..55531685,2	K562	blood:
2	chr15:55512853..55516000-chr15:55580346..55583057,3	K562	blood:
3	chr15:55504661..55507549-chr15:55511770..55516084,4	K562	blood:
4	chr15:55508422..55515195-chr15:55580692..55586566,10	MCF-7	breast:
5	chr15:55513763..55514626-chr15:55582008..55582877,2	K562	blood:
6	chr15:55511874..55516207-chr15:55570260..55572623,4	K562	blood:

Variant related genes	Relation type
ENSG00000069974	Chromatin interaction

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs11632755	1.00[AMR][1000 genomes]
rs1865473	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4774752	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs57564551	1.00[AMR][1000 genomes]
rs58612209	1.00[AMR][1000 genomes]
rs684011	1.00[AMR][1000 genomes]
rs73421704	1.00[AMR][1000 genomes]
rs73421730	1.00[AMR][1000 genomes]
rs73421750	1.00[AMR][1000 genomes]
rs73421757	1.00[AMR][1000 genomes]
rs73421759	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043176	chr15:55010228-55563000	Genic enhancers Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv1042741	chr15:55068022-55622497	Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
3	nsv1039471	chr15:55137606-55552555	Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
4	nsv917323	chr15:55290499-56041334	Genic enhancers Active TSS ZNF genes & repeats Weak transcription Strong transcription Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	57 gene(s)	inside rSNPs	diseases
5	nsv1043789	chr15:55400872-56092454	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
6	nsv1049977	chr15:55502508-55555694	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:96 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:55489800-55540200	Weak transcription	Esophagus	oesophagus
2	chr15:55490000-55517200	Weak transcription	Aorta	Aorta
3	chr15:55490000-55529400	Weak transcription	Rectal Smooth Muscle	rectum
4	chr15:55490000-55562800	Weak transcription	Ovary	ovary
5	chr15:55497800-55518400	Weak transcription	Gastric	stomach
6	chr15:55498000-55514200	Weak transcription	Stomach Smooth Muscle	stomach
7	chr15:55508400-55517000	Weak transcription	Fetal Heart	heart
8	chr15:55508600-55522600	Weak transcription	Colon Smooth Muscle	Colon
9	chr15:55509400-55541600	Weak transcription	Small Intestine	intestine
10	chr15:55510200-55514600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr15:55510400-55517200	Weak transcription	Fetal Muscle Leg	muscle
12	chr15:55510400-55522600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
13	chr15:55510400-55525000	Weak transcription	Fetal Muscle Trunk	muscle
14	chr15:55510400-55528000	Weak transcription	Brain Inferior Temporal Lobe	brain
15	chr15:55510600-55523800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr15:55510800-55521000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr15:55511200-55516200	Genic enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr15:55512000-55515400	Enhancers	Fetal Lung	lung
19	chr15:55512200-55514400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chr15:55512400-55516000	Strong transcription	Fetal Stomach	stomach
21	chr15:55512600-55514400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
22	chr15:55512600-55514400	Enhancers	NHLF	lung
23	chr15:55512600-55515400	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
24	chr15:55512600-55515800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
25	chr15:55512800-55514200	Enhancers	NH-A	brain
26	chr15:55512800-55514200	Enhancers	NHDF-Ad	bronchial
27	chr15:55512800-55514200	Enhancers	NHEK	skin
28	chr15:55512800-55514600	Enhancers	HMEC	breast
29	chr15:55512800-55514800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
30	chr15:55512800-55515200	Enhancers	ES-I3 Cell Line	embryonic stem cell
31	chr15:55512800-55515600	Flanking Active TSS	Primary B cells from cord blood	blood
32	chr15:55512800-55541600	Weak transcription	Colonic Mucosa	Colon
33	chr15:55513000-55514200	Enhancers	Fetal Intestine Small	intestine
34	chr15:55513000-55514200	Enhancers	HSMM	muscle
35	chr15:55513000-55514400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
36	chr15:55513000-55514400	Enhancers	Fetal Intestine Large	intestine
37	chr15:55513000-55514600	Genic enhancers	Primary T helper 17 cells PMA-I stimulated	--
38	chr15:55513000-55514600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
39	chr15:55513000-55514600	Enhancers	Hela-S3	cervix
40	chr15:55513000-55514800	Enhancers	Primary hematopoietic stem cells	blood
41	chr15:55513000-55514800	Enhancers	Primary T helper cells PMA-I stimulated	--
42	chr15:55513000-55514800	Enhancers	HepG2	liver
43	chr15:55513000-55515000	Enhancers	Primary B cells from peripheral blood	blood
44	chr15:55513000-55515800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
45	chr15:55513000-55516200	Genic enhancers	Stomach Mucosa	stomach
46	chr15:55513000-55518000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
47	chr15:55513000-55518200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
48	chr15:55513000-55518200	Enhancers	Primary T killer memory cells from peripheral blood	blood
49	chr15:55513200-55514200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
50	chr15:55513200-55514200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived

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