Variant report

Variant	rs7162584
Chromosome Location	chr15:59151010-59151011
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:59150203..59152122-chr4:10117805..10120287,2	MCF-7	breast:
2	chr15:59146076..59151361-chr15:59223071..59227542,5	MCF-7	breast:
3	chr15:59144722..59148208-chr15:59148286..59151538,5	K562	blood:
4	chr15:59150365..59151946-chr15:59158006..59159550,2	K562	blood:

Variant related genes	Relation type
ENSG00000071127	Chromatin interaction
ENSG00000137776	Chromatin interaction

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs193224	1.00[EUR][1000 genomes]
rs347113	1.00[EUR][1000 genomes]
rs347114	1.00[EUR][1000 genomes]
rs364439	1.00[EUR][1000 genomes]
rs367267	1.00[EUR][1000 genomes]
rs374865	1.00[EUR][1000 genomes]
rs3890008	0.86[LWK][hapmap];0.83[YRI][hapmap]
rs411211	1.00[EUR][1000 genomes]
rs422259	1.00[EUR][1000 genomes]
rs432978	1.00[EUR][1000 genomes]
rs499269	1.00[EUR][1000 genomes]
rs529301	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs546116	1.00[EUR][1000 genomes]
rs556082	1.00[EUR][1000 genomes]
rs567876	1.00[EUR][1000 genomes]
rs59851506	1.00[EUR][1000 genomes]
rs620284	1.00[EUR][1000 genomes]
rs635349	1.00[EUR][1000 genomes]
rs6494046	0.83[YRI][hapmap]
rs650013	1.00[EUR][1000 genomes]
rs678020	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs7169181	0.83[YRI][hapmap]
rs7181329	0.83[YRI][hapmap]
rs73426549	1.00[EUR][1000 genomes]
rs73426599	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34110	chr15:58949991-59381634	Weak transcription Bivalent Enhancer Strong transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
2	esv1826703	chr15:59005922-59213678	Flanking Active TSS Enhancers Strong transcription Weak transcription Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
3	esv1798487	chr15:59027139-59213678	Strong transcription Weak transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
4	nsv527307	chr15:59103328-60018487	Enhancers Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	145 gene(s)	inside rSNPs	diseases
5	nsv1035640	chr15:59105360-59190930	Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
6	nsv904270	chr15:59140329-59238415	Genic enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
7	nsv974723	chr15:59150255-59153172	Weak transcription Strong transcription	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:100 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:59067000-59157800	Weak transcription	Hela-S3	cervix
2	chr15:59077800-59153600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
3	chr15:59090200-59156600	Weak transcription	Small Intestine	intestine
4	chr15:59095200-59156800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
5	chr15:59103800-59157000	Weak transcription	Psoas Muscle	Psoas
6	chr15:59104000-59157000	Weak transcription	Esophagus	oesophagus
7	chr15:59104000-59157200	Weak transcription	NHLF	lung
8	chr15:59106000-59156800	Weak transcription	Lung	lung
9	chr15:59106200-59156800	Weak transcription	Ovary	ovary
10	chr15:59106200-59157000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr15:59106600-59157000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr15:59106800-59156400	Weak transcription	Fetal Kidney	kidney
13	chr15:59111800-59159600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr15:59120000-59169000	Weak transcription	Cortex derived primary cultured neurospheres	brain
15	chr15:59122000-59156400	Weak transcription	Fetal Heart	heart
16	chr15:59126000-59156600	Weak transcription	Right Ventricle	heart
17	chr15:59126200-59157000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr15:59126800-59151200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
19	chr15:59127200-59156600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
20	chr15:59136000-59151800	Weak transcription	GM12878-XiMat	blood
21	chr15:59137200-59156800	Weak transcription	Spleen	Spleen
22	chr15:59138200-59156400	Weak transcription	Brain Substantia Nigra	brain
23	chr15:59138200-59156800	Weak transcription	Primary hematopoietic stem cells	blood
24	chr15:59138400-59155800	Weak transcription	Fetal Brain Male	brain
25	chr15:59140000-59155000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
26	chr15:59140600-59153600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
27	chr15:59140600-59154200	Weak transcription	Primary B cells from peripheral blood	blood
28	chr15:59140600-59154200	Weak transcription	Primary T helper cells PMA-I stimulated	--
29	chr15:59140600-59154200	Weak transcription	Brain Angular Gyrus	brain
30	chr15:59140600-59156400	Weak transcription	Liver	Liver
31	chr15:59140600-59156800	Weak transcription	Primary B cells from cord blood	blood
32	chr15:59140600-59156800	Weak transcription	Brain Cingulate Gyrus	brain
33	chr15:59140600-59156800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
34	chr15:59140800-59154200	Weak transcription	NHEK	skin
35	chr15:59140800-59156800	Weak transcription	Fetal Lung	lung
36	chr15:59141600-59154200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
37	chr15:59141800-59156800	Weak transcription	Fetal Muscle Trunk	muscle
38	chr15:59142600-59156800	Weak transcription	Stomach Smooth Muscle	stomach
39	chr15:59142800-59157000	Weak transcription	Brain Germinal Matrix	brain
40	chr15:59143000-59154200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
41	chr15:59143200-59156400	Weak transcription	Pancreatic Islets	Pancreatic Islet
42	chr15:59144200-59156400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
43	chr15:59144400-59156400	Weak transcription	Skeletal Muscle Male	skeletal muscle
44	chr15:59144400-59156600	Weak transcription	Fetal Muscle Leg	muscle
45	chr15:59144400-59156800	Weak transcription	Thymus	Thymus
46	chr15:59144400-59157000	Weak transcription	Aorta	Aorta
47	chr15:59144400-59157000	Weak transcription	Fetal Brain Female	brain
48	chr15:59144400-59157000	Weak transcription	Sigmoid Colon	Sigmoid Colon
49	chr15:59144800-59157000	Weak transcription	Placenta Amnion	Placenta Amnion
50	chr15:59145000-59166600	Weak transcription	HSMMtube	muscle

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