Variant report

Variant	rs71627591
Chromosome Location	chr5:43203258-43203259
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs12658283	0.93[ASN][1000 genomes]
rs12658284	0.93[ASN][1000 genomes]
rs12658308	0.93[ASN][1000 genomes]
rs12659157	0.88[ASN][1000 genomes]
rs13160133	0.84[EUR][1000 genomes]
rs13164889	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs13169195	0.80[EUR][1000 genomes]
rs13185037	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs17303482	0.80[EUR][1000 genomes]
rs34810824	0.96[EUR][1000 genomes]
rs35764948	0.96[EUR][1000 genomes]
rs4326151	0.87[ASN][1000 genomes]
rs71627588	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71627590	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs71627592	0.83[EUR][1000 genomes]
rs71627594	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv993554	chr5:42720939-43251863	Bivalent/Poised TSS Strong transcription Active TSS Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	298 gene(s)	inside rSNPs	diseases
2	nsv462126	chr5:42728831-43237188	Active TSS Enhancers Bivalent Enhancer Weak transcription Genic enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	297 gene(s)	inside rSNPs	diseases
3	nsv597925	chr5:42728831-43237188	Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Enhancers Weak transcription Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	297 gene(s)	inside rSNPs	diseases
4	nsv1023741	chr5:42768215-43348145	Flanking Active TSS Weak transcription Bivalent/Poised TSS Enhancers Strong transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	309 gene(s)	inside rSNPs	diseases
5	nsv537737	chr5:42768215-43348145	Genic enhancers Enhancers Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	309 gene(s)	inside rSNPs	diseases
6	nsv1024636	chr5:42959979-43295782	Active TSS Bivalent Enhancer Weak transcription Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	283 gene(s)	inside rSNPs	diseases
7	nsv537739	chr5:42959979-43295782	Strong transcription Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	283 gene(s)	inside rSNPs	diseases
8	nsv830274	chr5:43095551-43226087	Strong transcription Transcr. at gene 5' and 3' Genic enhancers Weak transcription Active TSS Flanking Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	138 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:43195000-43209000	Weak transcription	Brain Substantia Nigra	brain
2	chr5:43196200-43208800	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr5:43196200-43245400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr5:43196400-43205000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr5:43196400-43208800	Weak transcription	Brain Angular Gyrus	brain
6	chr5:43196400-43208800	Weak transcription	Brain Hippocampus Middle	brain
7	chr5:43196400-43208800	Weak transcription	Brain Inferior Temporal Lobe	brain
8	chr5:43196400-43209200	Weak transcription	Brain Cingulate Gyrus	brain
9	chr5:43198600-43208800	Weak transcription	Brain Anterior Caudate	brain
10	chr5:43202200-43203600	Enhancers	K562	blood
11	chr5:43202600-43203600	Enhancers	Stomach Mucosa	stomach
12	chr5:43202800-43204000	Enhancers	Osteobl	bone
13	chr5:43203200-43203400	Enhancers	Ovary	ovary
14	chr5:43203200-43203800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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