Variant report

Variant	rs71627856
Chromosome Location	chr3:105601615-105601616
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:105595423..105598244-chr3:105600923..105603422,2	K562	blood:
2	chr3:105594821..105597024-chr3:105599746..105602672,2	K562	blood:

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10804442	0.83[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs10933833	0.86[AFR][1000 genomes];0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11711088	0.83[AFR][1000 genomes];0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12636287	0.87[AFR][1000 genomes];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13060223	0.82[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs13085563	0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs13100446	0.88[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs1443102	0.83[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs1470283	0.82[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs1867195	0.91[ASN][1000 genomes]
rs1992522	0.81[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs2055557	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2099892	0.88[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs2399056	0.83[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs28427229	0.88[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs28533328	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3996189	0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4243427	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4447799	0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4894950	0.82[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs4894953	0.83[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs4894954	0.88[ASN][1000 genomes]
rs4894957	0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4894960	0.84[AFR][1000 genomes];0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4894962	0.87[AFR][1000 genomes];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6437624	0.84[AFR][1000 genomes];0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6788366	0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6795961	0.83[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs6807382	0.81[AFR][1000 genomes];0.86[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs7432372	0.83[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs7637327	0.87[AFR][1000 genomes];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7645021	0.89[ASN][1000 genomes]
rs7647955	0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7651784	0.88[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs769315	0.83[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs971110	0.89[ASN][1000 genomes]
rs9841500	0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1008564	chr3:105554580-105643435	Enhancers Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1008876	chr3:105554580-105645373	Active TSS Strong transcription Weak transcription Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv877312	chr3:105560638-105916506	Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:91 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:105601200-105601800	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr3:105601200-105601800	Active TSS	Fetal Heart	heart
3	chr3:105601200-105601800	Active TSS	Stomach Mucosa	stomach
4	chr3:105601200-105601800	Active TSS	HUVEC	blood vessel
5	chr3:105601200-105601800	Active TSS	NHDF-Ad	bronchial
6	chr3:105601200-105602000	Active TSS	iPS-15b Cell Line	embryonic stem cell
7	chr3:105601200-105602000	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr3:105601200-105602000	Active TSS	Primary B cells from cord blood	blood
9	chr3:105601200-105602000	Active TSS	Primary T cells fromperipheralblood	blood
10	chr3:105601200-105602000	Active TSS	Primary T helper cells PMA-I stimulated	--
11	chr3:105601200-105602000	Active TSS	Primary T helper 17 cells PMA-I stimulated	--
12	chr3:105601200-105602000	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
13	chr3:105601200-105602000	Active TSS	Primary T regulatory cells fromperipheralblood	blood
14	chr3:105601200-105602000	Active TSS	Primary Natural Killer cells fromperipheralblood	blood
15	chr3:105601200-105602000	Active TSS	Primary T killer naive cells fromperipheralblood	blood
16	chr3:105601200-105602000	Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chr3:105601200-105602000	Active TSS	Cortex derived primary cultured neurospheres	brain
18	chr3:105601200-105602000	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
19	chr3:105601200-105602000	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
20	chr3:105601200-105602000	Active TSS	Adipose Nuclei	Adipose
21	chr3:105601200-105602000	Active TSS	Liver	Liver
22	chr3:105601200-105602000	Active TSS	Brain Angular Gyrus	brain
23	chr3:105601200-105602000	Active TSS	Brain Anterior Caudate	brain
24	chr3:105601200-105602000	Active TSS	Brain Germinal Matrix	brain
25	chr3:105601200-105602000	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
26	chr3:105601200-105602000	Active TSS	Colon Smooth Muscle	Colon
27	chr3:105601200-105602000	Active TSS	Duodenum Smooth Muscle	Duodenum
28	chr3:105601200-105602000	Active TSS	Fetal Adrenal Gland	Adrenal Gland
29	chr3:105601200-105602000	Active TSS	Fetal Intestine Large	intestine
30	chr3:105601200-105602000	Active TSS	Fetal Intestine Small	intestine
31	chr3:105601200-105602000	Active TSS	Fetal Kidney	kidney
32	chr3:105601200-105602000	Active TSS	Pancreatic Islets	Pancreatic Islet
33	chr3:105601200-105602000	Active TSS	Fetal Muscle Leg	muscle
34	chr3:105601200-105602000	Active TSS	Fetal Stomach	stomach
35	chr3:105601200-105602000	Active TSS	Left Ventricle	heart
36	chr3:105601200-105602000	Active TSS	Ovary	ovary
37	chr3:105601200-105602000	Active TSS	Pancreas	Pancrea
38	chr3:105601200-105602000	Active TSS	Psoas Muscle	Psoas
39	chr3:105601200-105602000	Active TSS	Rectal Mucosa Donor 29	rectum
40	chr3:105601200-105602000	Active TSS	Rectal Smooth Muscle	rectum
41	chr3:105601200-105602000	Active TSS	Right Atrium	heart
42	chr3:105601200-105602000	Active TSS	Skeletal Muscle Female	skeletal muscle
43	chr3:105601200-105602000	Active TSS	Stomach Smooth Muscle	stomach
44	chr3:105601200-105602000	Active TSS	A549	lung
45	chr3:105601200-105602000	Active TSS	HSMMtube	muscle
46	chr3:105601200-105602000	Active TSS	K562	blood
47	chr3:105601200-105602000	Active TSS	NH-A	brain
48	chr3:105601200-105602000	Active TSS	NHLF	lung
49	chr3:105601200-105602000	Active TSS	Osteobl	bone
50	chr3:105601200-105602200	Active TSS	ES-I3 Cell Line	embryonic stem cell

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