Variant report

Variant	rs71627857
Chromosome Location	chr3:105648502-105648503
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 2 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs13097408	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877312	chr3:105560638-105916506	Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:105642800-105651000	Weak transcription	Placenta	Placenta
2	chr3:105647800-105650000	Weak transcription	HUES6 Cell Line	embryonic stem cell
3	chr3:105647800-105650200	Weak transcription	HUES48 Cell Line	embryonic stem cell
4	chr3:105647800-105650400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr3:105648000-105650200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
6	chr3:105648000-105650400	Weak transcription	iPS-20b Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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