Variant report

Variant	rs71629201
Chromosome Location	chr5:43737676-43737677
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10941642	1.00[AMR][1000 genomes]
rs12658205	1.00[AMR][1000 genomes]
rs13168986	1.00[EUR][1000 genomes]
rs34350522	1.00[AMR][1000 genomes]
rs34378343	1.00[AMR][1000 genomes]
rs34599970	1.00[EUR][1000 genomes]
rs34792822	1.00[AMR][1000 genomes]
rs34871596	1.00[AMR][1000 genomes]
rs35136550	1.00[AMR][1000 genomes]
rs35590922	1.00[AMR][1000 genomes]
rs35696038	1.00[AMR][1000 genomes]
rs35707409	1.00[AMR][1000 genomes]
rs35733458	1.00[AMR][1000 genomes]
rs35966682	1.00[AMR][1000 genomes]
rs36104847	1.00[AMR][1000 genomes]
rs4533897	1.00[AMR][1000 genomes]
rs71629177	1.00[AMR][1000 genomes]
rs71629178	1.00[AMR][1000 genomes]
rs71629180	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv881108	chr5:43527432-43800333	Weak transcription Strong transcription Genic enhancers Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	57 gene(s)	inside rSNPs	diseases
2	esv3471542	chr5:43665651-43824536	Weak transcription ZNF genes & repeats Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
3	esv3471543	chr5:43665767-43824443	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
4	nsv537740	chr5:43729430-43782732	Flanking Active TSS Weak transcription ZNF genes & repeats Enhancers Active TSS Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:43737400-43746200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links