Variant report

Variant	rs7163167
Chromosome Location	chr15:56037003-56037004
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:56035905..56037422-chr15:56138325..56141165,2	MCF-7	breast:
2	chr15:56036934..56038667-chr15:56040692..56043124,2	K562	blood:
3	chr15:56035867..56037850-chr15:56069521..56071241,2	MCF-7	breast:
4	chr15:56031905..56035384-chr15:56036677..56038977,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000166450	Chromatin interaction

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10518817	0.80[CHB][hapmap]
rs10851589	0.80[CHB][hapmap]
rs11854213	0.90[CHB][hapmap];0.83[CHD][hapmap]
rs12373006	0.85[CHB][hapmap]
rs12442771	0.85[CHB][hapmap];0.83[CHD][hapmap];0.81[ASN][1000 genomes]
rs12591246	0.85[CHB][hapmap]
rs16976472	0.80[CHB][hapmap]
rs1814329	0.90[CHB][hapmap];0.85[ASN][1000 genomes]
rs2008336	0.85[CHB][hapmap]
rs2118781	0.90[CHB][hapmap];0.83[CHD][hapmap]
rs2414424	0.85[CHB][hapmap];0.82[CHD][hapmap]
rs2414426	0.85[CHB][hapmap]
rs2414427	0.85[CHB][hapmap]
rs2414431	0.90[CHB][hapmap];0.83[CHD][hapmap];0.81[ASN][1000 genomes]
rs4377101	0.90[CHB][hapmap];0.83[CHD][hapmap]
rs4774802	0.85[CHB][hapmap]
rs558290	0.86[MEX][hapmap]
rs57782071	0.87[ASN][1000 genomes]
rs62043907	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs62043908	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6493809	0.90[CHB][hapmap];0.83[CHD][hapmap]
rs6493814	0.85[CHB][hapmap];0.81[ASN][1000 genomes]
rs7162879	0.80[CHB][hapmap]
rs7171318	0.80[CHB][hapmap]
rs7178379	0.80[CHB][hapmap]
rs7181212	0.90[CHB][hapmap]
rs7182733	0.85[CHB][hapmap]
rs7359255	0.90[CHB][hapmap];0.84[ASN][1000 genomes]
rs8025445	0.90[CHB][hapmap]
rs8030795	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs8037136	0.90[CHB][hapmap]
rs8038074	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv917323	chr15:55290499-56041334	Genic enhancers Active TSS ZNF genes & repeats Weak transcription Strong transcription Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	57 gene(s)	inside rSNPs	diseases
2	nsv1043789	chr15:55400872-56092454	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
3	nsv457157	chr15:55722213-56255774	Flanking Active TSS Enhancers Active TSS Strong transcription Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
4	nsv569539	chr15:55722213-56255774	Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
5	nsv1049774	chr15:55759573-56044600	Weak transcription Strong transcription Active TSS Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
6	nsv833017	chr15:55965957-56157912	Weak transcription Genic enhancers Strong transcription Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
7	esv3366380	chr15:56003224-56141650	Weak transcription Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Active TSS Strong transcription Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
8	nsv1052495	chr15:56013617-56102164	Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:56036600-56037200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr15:56036600-56037200	Enhancers	Fetal Kidney	kidney
3	chr15:56036600-56037800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
4	chr15:56036800-56038200	Weak transcription	Right Atrium	heart
5	chr15:56037000-56038000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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