Variant report

Variant	rs7163362
Chromosome Location	chr15:75398399-75398400
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:75397387..75399012-chr15:75399789..75402626,2	MCF-7	breast:
2	chr15:75396160..75400460-chr15:75492544..75495531,4	MCF-7	breast:
3	chr15:75396689..75398757-chr15:75493446..75495578,3	MCF-7	breast:
4	chr15:75393099..75394810-chr15:75397322..75398967,2	K562	blood:
5	chr15:75397784..75400283-chr15:75400579..75402865,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000167173	Chromatin interaction

Extended variants
information (count: 29 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs11854975	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12101482	0.82[EUR][1000 genomes]
rs12148488	0.83[EUR][1000 genomes]
rs12898551	0.84[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs12899062	0.82[EUR][1000 genomes]
rs12900072	0.84[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs12904227	0.83[EUR][1000 genomes]
rs1867148	0.81[EUR][1000 genomes]
rs1867149	0.81[EUR][1000 genomes]
rs2304902	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs35078352	0.80[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4886417	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4886648	0.84[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs4886655	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6495144	0.82[EUR][1000 genomes]
rs6495150	0.83[EUR][1000 genomes]
rs6495151	0.82[EUR][1000 genomes]
rs67168917	0.84[EUR][1000 genomes]
rs7163636	0.82[EUR][1000 genomes]
rs7167261	0.82[EUR][1000 genomes]
rs7181261	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs8028129	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs8039755	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv569993	chr15:75242155-75483752	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	72 gene(s)	inside rSNPs	diseases
2	nsv457205	chr15:75336729-75447773	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv569994	chr15:75336729-75447773	Genic enhancers Weak transcription Enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv904383	chr15:75382542-75520378	Weak transcription Genic enhancers Enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
5	esv1796196	chr15:75389382-75531124	Weak transcription Active TSS Bivalent Enhancer Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
6	nsv1039713	chr15:75394213-75674389	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	96 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7163362	SCAMP5	cis	Artery Tibial	GTEx

Chromatin state (count:64 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:75395400-75403400	Enhancers	Placenta	Placenta
2	chr15:75395600-75405800	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr15:75396000-75398800	Enhancers	Primary B cells from peripheral blood	blood
4	chr15:75396400-75398600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
5	chr15:75396600-75398600	Enhancers	Lung	lung
6	chr15:75396600-75398800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr15:75396600-75398800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr15:75396600-75398800	Enhancers	Spleen	Spleen
9	chr15:75396600-75401400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
10	chr15:75396600-75402200	Enhancers	HUVEC	blood vessel
11	chr15:75396600-75405600	Enhancers	Primary hematopoietic stem cells	blood
12	chr15:75396600-75406200	Enhancers	Primary B cells from cord blood	blood
13	chr15:75396800-75398600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr15:75396800-75398800	Enhancers	HepG2	liver
15	chr15:75397000-75398600	Enhancers	Adipose Nuclei	Adipose
16	chr15:75397000-75398600	Enhancers	Fetal Intestine Large	intestine
17	chr15:75397000-75398600	Enhancers	NH-A	brain
18	chr15:75397000-75398800	Enhancers	HMEC	breast
19	chr15:75397000-75399000	Enhancers	NHDF-Ad	bronchial
20	chr15:75397000-75399200	Enhancers	Osteobl	bone
21	chr15:75397000-75403600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
22	chr15:75397200-75398800	Enhancers	HSMM	muscle
23	chr15:75397400-75399200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr15:75397400-75400800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
25	chr15:75397600-75398800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr15:75397600-75400600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
27	chr15:75397600-75400600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
28	chr15:75397600-75400600	Weak transcription	Primary T helper cells fromperipheralblood	blood
29	chr15:75397600-75400600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
30	chr15:75397600-75400800	Weak transcription	Right Ventricle	heart
31	chr15:75397600-75400800	Weak transcription	Skeletal Muscle Female	skeletal muscle
32	chr15:75397600-75401400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
33	chr15:75397600-75406800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
34	chr15:75397600-75415800	Weak transcription	Ovary	ovary
35	chr15:75397800-75399000	Enhancers	Muscle Satellite Cultured Cells	--
36	chr15:75397800-75400000	Weak transcription	NHLF	lung
37	chr15:75397800-75400200	Weak transcription	Rectal Mucosa Donor 31	rectum
38	chr15:75397800-75400400	Enhancers	Primary neutrophils fromperipheralblood	blood
39	chr15:75397800-75400400	Enhancers	GM12878-XiMat	blood
40	chr15:75397800-75400600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
41	chr15:75397800-75400600	Weak transcription	Placenta Amnion	Placenta Amnion
42	chr15:75397800-75400800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
43	chr15:75397800-75400800	Weak transcription	Fetal Muscle Leg	muscle
44	chr15:75397800-75400800	Weak transcription	Left Ventricle	heart
45	chr15:75397800-75402400	Weak transcription	Brain Hippocampus Middle	brain
46	chr15:75398000-75398400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
47	chr15:75398000-75398800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
48	chr15:75398000-75399200	Enhancers	Hela-S3	cervix
49	chr15:75398000-75399800	Weak transcription	Fetal Thymus	thymus
50	chr15:75398000-75400200	Weak transcription	Rectal Mucosa Donor 29	rectum

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