Variant report

Variant	rs71637308
Chromosome Location	chr5:89916574-89916575
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:89908130..89913352-chr5:89914891..89917115,4	K562	blood:
2	chr5:89911565..89913352-chr5:89915615..89918600,2	K562	blood:

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10056775	0.82[EUR][1000 genomes]
rs10514330	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11738461	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11738532	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11739958	0.81[EUR][1000 genomes]
rs11742844	0.83[EUR][1000 genomes]
rs11745908	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11748911	0.90[EUR][1000 genomes]
rs11749693	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs13153138	0.81[EUR][1000 genomes]
rs13157270	0.81[EUR][1000 genomes]
rs13159048	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs13164404	0.90[EUR][1000 genomes]
rs13167847	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs13171056	0.81[EUR][1000 genomes]
rs13182944	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs13183331	0.81[EUR][1000 genomes]
rs13186124	0.90[EUR][1000 genomes]
rs13190272	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs16868809	0.86[AFR][1000 genomes]
rs17541517	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17541704	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17541912	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17542086	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17542921	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs17543150	0.90[EUR][1000 genomes]
rs17614588	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17621038	0.90[EUR][1000 genomes]
rs17621160	0.90[EUR][1000 genomes]
rs17621985	0.81[EUR][1000 genomes]
rs17622555	0.81[EUR][1000 genomes]
rs28399862	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs28429067	0.86[AFR][1000 genomes]
rs34301936	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs34490215	0.85[EUR][1000 genomes]
rs34719862	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs34774423	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs35312877	0.81[EUR][1000 genomes]
rs35667071	0.90[EUR][1000 genomes]
rs35680172	0.81[EUR][1000 genomes]
rs35980777	0.86[EUR][1000 genomes]
rs36045161	0.81[EUR][1000 genomes]
rs66683260	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432750	chr5:89410113-90137144	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv432751	chr5:89457044-90090444	Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
3	nsv529544	chr5:89523963-90412409	Weak transcription Enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
4	nsv933668	chr5:89854253-89999672	Strong transcription Enhancers Weak transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases
5	nsv531965	chr5:89886550-90145002	Weak transcription Enhancers Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:89902600-89917400	Weak transcription	H1 Cell Line	embryonic stem cell
2	chr5:89909800-89919600	Weak transcription	HUES6 Cell Line	embryonic stem cell
3	chr5:89909800-89923200	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr5:89909800-89923200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr5:89909800-89926400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr5:89909800-89928800	Weak transcription	Fetal Brain Female	brain
7	chr5:89910000-89927000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr5:89910000-89928600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr5:89910600-89916800	Weak transcription	K562	blood
10	chr5:89914000-89919400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr5:89914200-89919400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
12	chr5:89914200-89920800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr5:89914200-89927000	Weak transcription	Cortex derived primary cultured neurospheres	brain
14	chr5:89914200-89928600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr5:89914400-89917400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr5:89915400-89916800	Weak transcription	HUES48 Cell Line	embryonic stem cell
17	chr5:89915400-89917000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
18	chr5:89915400-89917400	Weak transcription	HUES64 Cell Line	embryonic stem cell
19	chr5:89915400-89917600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr5:89915600-89917800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links