Variant report

No.	Distal block	Cell Line	Cell type
1	chr5:90575881..90577890-chr5:90584257..90586570,2	MCF-7	breast:
2	chr5:90584273..90591126-chr5:90674763..90680414,9	K562	blood:
3	chr5:90583616..90587615-chr5:90675454..90678500,4	MCF-7	breast:
4	chr5:90567993..90570538-chr5:90584215..90586470,2	K562	blood:

Variant related genes	Relation type
ENSG00000234292	Chromatin interaction
ENSG00000113369	Chromatin interaction

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10474349	0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs10942627	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12522282	0.81[AMR][1000 genomes]
rs13156743	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13166594	0.94[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs13172199	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13185895	0.89[AMR][1000 genomes]
rs13360803	0.83[ASN][1000 genomes]
rs2941890	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2941892	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2973461	0.83[ASN][1000 genomes]
rs2973464	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2973467	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs34422832	0.97[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs34581109	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34736685	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35059634	0.89[AMR][1000 genomes]
rs35363385	0.81[AMR][1000 genomes]
rs35584449	0.86[AMR][1000 genomes]
rs71637330	0.94[AMR][1000 genomes];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs71637331	0.97[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs9293563	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024813	chr5:90321535-90870739	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	84 gene(s)	inside rSNPs	diseases
2	nsv537806	chr5:90321535-90870739	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	84 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:90580400-90587200	Weak transcription	Primary neutrophils fromperipheralblood	blood
2	chr5:90583800-90587800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr5:90584000-90589000	Weak transcription	Placenta	Placenta
4	chr5:90584400-90587400	Weak transcription	Cortex derived primary cultured neurospheres	brain
5	chr5:90584600-90589600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr5:90584800-90588000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
7	chr5:90584800-90589000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr5:90584800-90589200	Weak transcription	Placenta Amnion	Placenta Amnion
9	chr5:90585000-90589000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr5:90585000-90592000	Weak transcription	Skeletal Muscle Male	skeletal muscle
11	chr5:90585200-90587400	Weak transcription	Fetal Thymus	thymus
12	chr5:90585400-90589400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
13	chr5:90585800-90588200	Weak transcription	Thymus	Thymus
14	chr5:90586000-90588800	Weak transcription	Fetal Heart	heart
15	chr5:90586000-90592000	Weak transcription	Right Atrium	heart

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