Variant report

Variant	rs7163733
Chromosome Location	chr15:58924319-58924320
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:58915714..58920888-chr15:58922126..58927407,8	K562	blood:
2	chr15:58915714..58921238-chr15:58922986..58925558,6	K562	blood:

Extended variants
information (count: 115 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:110)

rs_ID	r²[population]
rs10851639	0.83[JPT][hapmap]
rs11071391	0.87[CEU][hapmap];0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11071392	0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11071393	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11071397	0.82[CEU][hapmap]
rs12437457	0.88[CEU][hapmap];0.88[AMR][1000 genomes]
rs12437955	0.80[ASN][1000 genomes]
rs12437998	0.85[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs12438487	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12438810	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12439189	0.83[JPT][hapmap]
rs12439231	0.94[CEU][hapmap]
rs12439632	0.81[CEU][hapmap]
rs12440091	0.82[EUR][1000 genomes]
rs12440246	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12441313	0.94[CEU][hapmap]
rs12441912	0.93[CEU][hapmap]
rs12442451	0.94[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12442956	0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12591291	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12591310	0.82[CEU][hapmap]
rs12591543	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12592332	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12592750	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12594742	0.94[CEU][hapmap];0.81[YRI][hapmap];0.82[AMR][1000 genomes]
rs12708455	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12901989	0.83[CEU][hapmap];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12905110	1.00[CEU][hapmap]
rs12905173	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12906705	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12906714	0.94[CEU][hapmap];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12907237	0.93[CEU][hapmap];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12908165	0.87[CEU][hapmap]
rs12908261	0.94[CEU][hapmap]
rs12908449	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12912286	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12912327	0.81[AMR][1000 genomes]
rs12913383	0.89[CEU][hapmap];0.95[CHB][hapmap]
rs12915950	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12916010	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12917500	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12917577	0.83[CEU][hapmap];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1365772	0.83[JPT][hapmap]
rs1426652	0.82[CEU][hapmap]
rs16940587	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs16940589	0.83[CEU][hapmap];1.00[CHB][hapmap];0.96[JPT][hapmap];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs16940647	0.89[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs16940651	0.94[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.96[YRI][hapmap];0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17236194	0.94[CEU][hapmap]
rs17301905	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1820548	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1869133	0.87[JPT][hapmap]
rs1869135	0.83[JPT][hapmap]
rs2052804	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2052805	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2303532	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2305421	0.88[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs28417700	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs28455654	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.83[YRI][hapmap];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs28457680	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs28542491	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs28573205	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs28576281	0.80[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs28584993	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs28600144	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs28609304	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs28637832	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs28639679	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs28678478	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs28722857	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs28724298	0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs28728383	0.82[EUR][1000 genomes]
rs28852159	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs34793995	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35499736	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3764196	0.83[JPT][hapmap]
rs6494030	0.94[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6494031	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6494032	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6494033	0.89[CEU][hapmap]
rs6494034	0.94[CEU][hapmap];0.81[CHB][hapmap]
rs6494038	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap]
rs7164620	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7165035	0.88[CEU][hapmap];0.91[CHB][hapmap];0.91[JPT][hapmap];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7165402	0.94[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7166076	0.89[CEU][hapmap];1.00[CHB][hapmap];0.96[JPT][hapmap];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7166325	0.94[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7167528	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.83[YRI][hapmap];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7169205	0.82[CEU][hapmap]
rs7170314	0.89[CEU][hapmap]
rs7174175	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7174386	0.94[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7174414	0.80[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7178954	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7180550	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs8026668	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs8029805	0.94[CEU][hapmap]
rs8033565	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs8033691	0.94[CEU][hapmap]
rs8035960	0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs8036005	0.83[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs8039791	1.00[CHB][hapmap];0.95[JPT][hapmap];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs8040358	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9302203	0.89[CEU][hapmap];0.85[CHB][hapmap];0.82[JPT][hapmap];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9635351	0.83[CEU][hapmap];0.90[CHB][hapmap];0.96[JPT][hapmap];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9744518	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9920042	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9920310	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9920720	0.89[CEU][hapmap];0.95[CHB][hapmap];0.96[JPT][hapmap];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9921024	0.82[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051058	chr15:58519922-59092530	Strong transcription Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv542401	chr15:58519922-59092530	Strong transcription Weak transcription Active TSS Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
3	nsv1551	chr15:58891639-58936580	Strong transcription Weak transcription Genic enhancers Active TSS Flanking Active TSS Enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
4	nsv904269	chr15:58906145-58992591	Enhancers Strong transcription ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	nsv569602	chr15:58914326-58964437	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:117 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:58891400-58959600	Weak transcription	H1 Cell Line	embryonic stem cell
2	chr15:58905000-58983200	Weak transcription	Esophagus	oesophagus
3	chr15:58905400-58971800	Weak transcription	Spleen	Spleen
4	chr15:58905600-58976400	Weak transcription	Gastric	stomach
5	chr15:58906400-58976400	Weak transcription	Small Intestine	intestine
6	chr15:58907800-58952000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr15:58910400-58934000	Weak transcription	Psoas Muscle	Psoas
8	chr15:58910800-58926200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr15:58911600-58951200	Weak transcription	Fetal Brain Male	brain
10	chr15:58911600-58958000	Weak transcription	Fetal Brain Female	brain
11	chr15:58914200-58957600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
12	chr15:58914600-58957000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
13	chr15:58917000-58959600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr15:58917600-58925600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr15:58919800-58959200	Weak transcription	Brain Germinal Matrix	brain
16	chr15:58920200-58930000	Weak transcription	HUES6 Cell Line	embryonic stem cell
17	chr15:58920200-58946600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
18	chr15:58920200-58957200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
19	chr15:58920400-58933000	Weak transcription	Fetal Kidney	kidney
20	chr15:58921000-58929000	Weak transcription	Left Ventricle	heart
21	chr15:58921000-58957600	Weak transcription	Colonic Mucosa	Colon
22	chr15:58921200-58924400	Weak transcription	Rectal Mucosa Donor 31	rectum
23	chr15:58921200-58930200	Weak transcription	Primary T cells fromperipheralblood	blood
24	chr15:58921200-58931000	Weak transcription	Duodenum Smooth Muscle	Duodenum
25	chr15:58921200-58932200	Weak transcription	Stomach Smooth Muscle	stomach
26	chr15:58921200-58932200	Weak transcription	HSMMtube	muscle
27	chr15:58921200-58933000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
28	chr15:58921200-58933800	Weak transcription	Colon Smooth Muscle	Colon
29	chr15:58921200-58946400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
30	chr15:58921200-58946600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
31	chr15:58921200-58946800	Weak transcription	Cortex derived primary cultured neurospheres	brain
32	chr15:58921200-58949400	Weak transcription	Brain Inferior Temporal Lobe	brain
33	chr15:58921200-58959600	Weak transcription	Aorta	Aorta
34	chr15:58921200-58968400	Weak transcription	Skeletal Muscle Male	skeletal muscle
35	chr15:58921400-58926400	Weak transcription	Primary neutrophils fromperipheralblood	blood
36	chr15:58921400-58929800	Weak transcription	NH-A	brain
37	chr15:58921600-58924400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
38	chr15:58921600-58924600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
39	chr15:58921600-58924600	Weak transcription	Primary hematopoietic stem cells	blood
40	chr15:58921600-58926800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
41	chr15:58921600-58929000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
42	chr15:58921600-58929600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
43	chr15:58921600-58932200	Weak transcription	Skeletal Muscle Female	skeletal muscle
44	chr15:58921600-58932800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
45	chr15:58921600-58933800	Weak transcription	Brain Anterior Caudate	brain
46	chr15:58921600-58933800	Weak transcription	Osteobl	bone
47	chr15:58921600-58942400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
48	chr15:58921600-58946600	Weak transcription	Fetal Intestine Small	intestine
49	chr15:58921600-58959200	Weak transcription	NHLF	lung
50	chr15:58921600-58976600	Weak transcription	Right Ventricle	heart

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