Variant report

Variant	rs71637468
Chromosome Location	chr1:173378691-173378692
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:173224308..173225029-chr1:173377753..173378776,4	MCF-7	breast:
2	chr1:173378501..173381323-chr1:173794194..173795815,2	K562	blood:
3	chr1:173378386..173381395-chr1:173383017..173386939,3	K562	blood:

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs12739142	0.82[AMR][1000 genomes]
rs12741843	0.82[AMR][1000 genomes]
rs2000	0.91[AMR][1000 genomes]
rs41264568	0.91[AMR][1000 genomes]
rs6681720	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831915	chr1:173268424-173482157	Flanking Active TSS Active TSS Weak transcription Enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:102 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:173348600-173389400	Weak transcription	Right Ventricle	heart
2	chr1:173354000-173379800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
3	chr1:173355400-173379800	Weak transcription	Pancreas	Pancrea
4	chr1:173362600-173381200	Weak transcription	Ovary	ovary
5	chr1:173362800-173379800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr1:173362800-173382600	Weak transcription	Fetal Heart	heart
7	chr1:173363000-173379000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr1:173363800-173389400	Weak transcription	Fetal Lung	lung
9	chr1:173365000-173385200	Weak transcription	Fetal Stomach	stomach
10	chr1:173365200-173382600	Weak transcription	Fetal Muscle Leg	muscle
11	chr1:173367800-173379600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
12	chr1:173370800-173379400	Weak transcription	HUES6 Cell Line	embryonic stem cell
13	chr1:173370800-173382600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
14	chr1:173370800-173389200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
15	chr1:173370800-173389200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
16	chr1:173370800-173389400	Weak transcription	H1 Cell Line	embryonic stem cell
17	chr1:173370800-173389400	Weak transcription	H9 Cell Line	embryonic stem cell
18	chr1:173370800-173389400	Weak transcription	Aorta	Aorta
19	chr1:173372000-173398600	Weak transcription	Brain Substantia Nigra	brain
20	chr1:173374800-173379800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
21	chr1:173374800-173382600	Weak transcription	Fetal Intestine Small	intestine
22	chr1:173375200-173398600	Weak transcription	Esophagus	oesophagus
23	chr1:173375400-173378800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
24	chr1:173375400-173378800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
25	chr1:173375400-173378800	Weak transcription	HSMMtube	muscle
26	chr1:173375400-173379000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
27	chr1:173375400-173379800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
28	chr1:173375400-173381400	Weak transcription	NHDF-Ad	bronchial
29	chr1:173375400-173381400	Weak transcription	NHLF	lung
30	chr1:173376000-173379200	Enhancers	Primary B cells from cord blood	blood
31	chr1:173376000-173379200	Enhancers	Dnd41	blood
32	chr1:173376000-173389400	Weak transcription	Brain Cingulate Gyrus	brain
33	chr1:173376200-173378800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
34	chr1:173376200-173379600	Weak transcription	Brain Hippocampus Middle	brain
35	chr1:173376200-173379600	Weak transcription	Placenta Amnion	Placenta Amnion
36	chr1:173376200-173380000	Weak transcription	Right Atrium	heart
37	chr1:173376200-173381200	Weak transcription	Hela-S3	cervix
38	chr1:173376200-173383000	Weak transcription	K562	blood
39	chr1:173376200-173389400	Weak transcription	Brain Anterior Caudate	brain
40	chr1:173376200-173429000	Weak transcription	Gastric	stomach
41	chr1:173376400-173378800	Weak transcription	Left Ventricle	heart
42	chr1:173376400-173379400	Weak transcription	Primary neutrophils fromperipheralblood	blood
43	chr1:173376400-173379400	Weak transcription	Duodenum Smooth Muscle	Duodenum
44	chr1:173376400-173379400	Weak transcription	Skeletal Muscle Male	skeletal muscle
45	chr1:173376400-173379600	Weak transcription	Stomach Smooth Muscle	stomach
46	chr1:173376400-173379800	Weak transcription	Adipose Nuclei	Adipose
47	chr1:173376400-173379800	Weak transcription	Psoas Muscle	Psoas
48	chr1:173376400-173379800	Weak transcription	Thymus	Thymus
49	chr1:173376400-173380600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
50	chr1:173376400-173382600	Weak transcription	Skeletal Muscle Female	skeletal muscle

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