Variant report

Variant	rs7164089
Chromosome Location	chr15:73293128-73293129
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs4494506	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7169103	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7171746	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3352103	chr15:73191535-73454001	Bivalent/Poised TSS Active TSS Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv482421	chr15:73279141-73426897	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:73284000-73294800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr15:73289200-73293600	Enhancers	Breast Myoepithelial Primary Cells	Breast
3	chr15:73290400-73293800	Enhancers	Fetal Brain Male	brain
4	chr15:73291200-73294800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr15:73291200-73295000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr15:73291600-73294400	Enhancers	Skeletal Muscle Male	skeletal muscle
7	chr15:73292200-73294600	Enhancers	Skeletal Muscle Female	skeletal muscle
8	chr15:73292200-73296800	Weak transcription	Sigmoid Colon	Sigmoid Colon
9	chr15:73292800-73297600	Weak transcription	Rectal Mucosa Donor 31	rectum
10	chr15:73292800-73301400	Weak transcription	Fetal Stomach	stomach

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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